Browse Element(s) Details


OsAffx.11406.1.S1_at

Description tigr:9629.m03856
TID=OsAffx.11406.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Histone deacetylase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4040011/11Histone deacetylase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40360OsAffx.11404.1.S1_s_at11/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40360Os.21565.1.S1_at1/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40370OsAffx.23603.2.S1_at6/111+23117960..23120571SIT4 phosphatase-associated family protein, putative
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein
LOC_Os01g40400OsAffx.11406.1.S1_at11/111+23135546..23137534Histone deacetylase family protein
LOC_Os01g40410OsAffx.27081.1.S1_x_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40410OsAffx.27081.1.S1_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40420Os.9530.2.S1_x_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.2.S1_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.1.S1_at10/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420OsAffx.27080.1.S1_x_at4/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40430OsAffx.23606.1.S1_at10/111+23151657..23153964WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0016441biological_processposttranscriptional gene silencing
GO:0016575biological_processhistone deacetylation
GO:0005634cellular_componentnucleus
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11406.1.S1_at--71--4471Chr01:23136512..23136532 (21 bp)
GCCTCCTGCTGGTGCAATGAGACGG
LOC_Os01g40400
OsAffx.11406.1.S1_at--764--1851Chr01:23135913..23135937 (25 bp)
ACGACATACCCAAGCATGGTTTCGA
LOC_Os01g40400
OsAffx.11406.1.S1_at--738--4071Chr01:23135891..23135915 (25 bp)
CGACGTGTTCTACAAGAACCAGGAG
LOC_Os01g40400
OsAffx.11406.1.S1_at--581--7031Chr01:23135867..23135891 (25 bp)
GTACAAGCTCCACTACAAGTTGGAG
LOC_Os01g40400
OsAffx.11406.1.S1_at--827--2211Chr01:23135853..23135877 (25 bp)
ACAAGTTGGAGACGAAGCACCTGCA
LOC_Os01g40400
OsAffx.11406.1.S1_at--402--1951Chr01:23135815..23135839 (25 bp)
ACGGCGAACTCCATAGACGGCATCA
LOC_Os01g40400
OsAffx.11406.1.S1_at--514--10011Chr01:23135802..23135826 (25 bp)
TAGACGGCATCAGGATGGCGGCCAT
LOC_Os01g40400
OsAffx.11406.1.S1_at--767--3931Chr01:23135646..23135670 (25 bp)
CGGCGAGGCTGCACCGGAAGCTCTA
LOC_Os01g40400
OsAffx.11406.1.S1_at--87--9891Chr01:23135623..23135647 (25 bp)
TACTTCGAGCCCACCGGAGATCAGG
LOC_Os01g40400
OsAffx.11406.1.S1_at--183--8051Chr01:23135608..23135632 (25 bp)
GGAGATCAGGAGAGCCCCTACACTA
LOC_Os01g40400
OsAffx.11406.1.S1_at--361--1371Chr01:23135598..23135622 (25 bp)
AGAGCCCCTACACTAAGCACAGGTG
LOC_Os01g40400
Target Sequence 
GCCTCCTGCTGGTGCAATGAGACGGCGGTGGCCATCGGCAAGGAGATCCCCAACGACATACCCAAGCATGGTTTCGACGT
GTTCTACAAGAACCAGGAGTACAAGCTCCACTACAAGTTGGAGACGAAGCACCTGCACCGCAACCGCAACACGGCGAACT
CCATAGACGGCATCAGGATGGCGGCCATGGAGAACCTCTCCAAACTGAAGCTGGAGGCGGCGGCGAGCGTGCAGTTCGAG
GAGCGCCGCCACCGGAGCATCAACGTCGGCGACCTCTACTACGACCCACGCGAGCAGGAAGAGGAAGAGGAGAGCCCCAC
GGCGAGGCTGCACCGGAAGCTCTACTTCGAGCCCACCGGAGATCAGGAGAGCCCCTACACTAAGCACAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis