Browse Element(s) Details


OsAffx.27080.1.S1_x_at

Description tigr:9633.m02719
TID=OsAffx.27080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g404204/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein
LOC_Os01g40400OsAffx.11406.1.S1_at11/111+23135546..23137534Histone deacetylase family protein
LOC_Os01g40410OsAffx.27081.1.S1_x_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40410OsAffx.27081.1.S1_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40420Os.9530.2.S1_x_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.2.S1_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.1.S1_at10/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420OsAffx.27080.1.S1_x_at4/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40430OsAffx.23606.1.S1_at10/111+23151657..23153964WRKY DNA binding domain containing protein, expressed
LOC_Os01g40450OsAffx.23607.1.S1_x_at11/111+23162626..23166968expressed protein
LOC_Os01g40460OsAffx.26476.1.S1_x_at11/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_x_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.3.S1_at2/111+23173674..23176479hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27080.1.S1_x_at--790--7652Chr05:17373763..17373787 (25 bp)
GGGAGGTACCTTGGCATCATTGATT
NONE
OsAffx.27080.1.S1_x_at--874--411Chr05:17373778..17373802 (25 bp)
ATCATTGATTACTCGGCTATCCTCC
NONE
OsAffx.27080.1.S1_x_at--112--2291Chr05:17373816..17373840 (25 bp)
AAATGCTGAGATTACCGCCGTTGCT
NONE
OsAffx.27080.1.S1_x_at--745--2312Chr05:17374515..17374539 (25 bp)
AAAGGATGGACTAACTGCTGCTGAT
NONE
OsAffx.27080.1.S1_x_at--188--3172Chr05:17374951..17374975 (25 bp)
AATTGTAGAATCCTACCGCTGGTCT
NONE
OsAffx.27080.1.S1_x_at--453--10631Chr05:17375002..17375026 (25 bp)
TTCCATGCTTACTGTACTACCGTTG
NONE
OsAffx.27080.1.S1_x_at--270--2031Chr05:17375017..17375041 (25 bp)
ACTACCGTTGCTACCGAAGTACAGG
NONE
OsAffx.27080.1.S1_x_at--1123--10511Chr05:17375811..17375835 (25 bp)
TTCATGAAGACCATAGGCTCCACCG
NONE
OsAffx.27080.1.S1_x_at--532--8311Chr05:17375826..17375850 (25 bp)
GGCTCCACCGTTCTTGATTCAGGGA
NONE
OsAffx.27080.1.S1_x_at--553--4912Chr05:17375889..17375913 (25 bp)
GCTTCTCTTGGCAGCGTGATTGACA
NONE
OsAffx.27080.1.S1_x_at--283--351Chr05:17375928..17375952 (25 bp)
ATAACCCACCGGATATATACGTCGT
NONE
Target Sequence 
GGGAGGTACCTTGGCATCATTGATTACTCGGCTATCCTCCTGTGGGTTCTAGAAAATGCTGAGATTACCGCCGTTGCTCT
ATCAGCTGGGTCAGCAACCGTGGCAGGAGTTGGAATGGGTGCTGTCGGTGCAGTGGGAGTGGCAGCATTGGGTGCAATAG
GGGCTGCTGTTGCTGGTGGGTTAACAGCAGAAAAGGGTGTGGCAAAGGATGGACTAACTGCTGCTGATCATTTAGGAGAA
GATTTCTACAAAGTTCTGCTTCAGCAAGAACATTTCAAATCAACCACAGTTCGATCAATTGTAGAATCCTACCGCTGGTC
TCCTTCTGTCTCCATTACACTGGACACTTCCATGCTTACTGTACTACCGTTGCTACCGAAGTACAGGCAACTTACTGTCA
TGGAGTTCATGAAGACCATAGGCTCCACCGTTCTTGATTCAGGGAACGGCCTGGTGAAGCCACCTCTCACCTGTTCGCCT
GACGCTTCTCTTGGCAGCGTGATTGACAGCATTGCATCAAGAATAACCCACCGGATATATACGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27080.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis