Browse Element(s) Details


OsAffx.23607.1.S1_x_at

Description gb:NM_192541.1
DB_XREF= gi:34912165
GEN=P0712E02.27
TID=OsAffx.23607.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0712E02.27 (P0712E02.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4045011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40410OsAffx.27081.1.S1_x_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40410OsAffx.27081.1.S1_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40420Os.9530.2.S1_x_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.2.S1_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.1.S1_at10/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420OsAffx.27080.1.S1_x_at4/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40430OsAffx.23606.1.S1_at10/111+23151657..23153964WRKY DNA binding domain containing protein, expressed
LOC_Os01g40450OsAffx.23607.1.S1_x_at11/111+23162626..23166968expressed protein
LOC_Os01g40460OsAffx.26476.1.S1_x_at11/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_x_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.3.S1_at2/111+23173674..23176479hypothetical protein
LOC_Os01g40470Os.8078.1.S1_at11/111+23182352..23186587Vacuolar ATP synthase subunit d, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23607.1.S1_x_at--263--5231Chr01:23163189..23163213 (25 bp)
GAATATTCGTTGTCATGTCCTCTAT
LOC_Os01g40450
OsAffx.23607.1.S1_x_at--174--4711Chr01:23163160..23163184 (25 bp)
GCGGCCTCCTCAAGAACACGTAGGA
LOC_Os01g40450
OsAffx.23607.1.S1_x_at--46--5431Chr01:23163147..23163171 (25 bp)
GAACACGTAGGAAACCTTGGCCACG
LOC_Os01g40450
OsAffx.23607.1.S1_x_at--83--10872Chr07:25477790..25477940 (25 bp)
TTGGCCACGGGTTCCTCGTCGCAGG
NONE
OsAffx.23607.1.S1_x_at--1092--6453Chr07:13183391..13183417 (25 bp)
GTTCCTCGTCGCAGGTGGGACCCAC
NONE
OsAffx.23607.1.S1_x_at--991--4111Chr01:23163086..23163110 (25 bp)
CGCACCGTCACGTCAAGGATGGGAG
LOC_Os01g40450
OsAffx.23607.1.S1_x_at--1036--971Chr01:23163057..23163081 (25 bp)
AGGAGAGAGACCTCGTTGTCCATCG
LOC_Os01g40450
OsAffx.23607.1.S1_x_at--304--1351Chr01:23163052..23163076 (25 bp)
AGAGACCTCGTTGTCCATCGTTGCG
LOC_Os01g40450
OsAffx.23607.1.S1_x_at--802--4751Chr01:23162950..23162974 (25 bp)
GCTGAAGAAGCTTGCCGGCTTCCTT
LOC_Os01g40450
OsAffx.23607.1.S1_x_at--21--9251Chr01:23162930..23162954 (25 bp)
TCCTTCGCCCGACGATGCCGGAGAA
LOC_Os01g40450
OsAffx.23607.1.S1_x_at--614--3211Chr01:23162706..23162730 (25 bp)
CAAGTCCATGTTGCCGACCTAGTCG
LOC_Os01g40450
Target Sequence 
GAATATTCGTTGTCATGTCCTCTATCCGCGCGGCCTCCTCAAGAACACGTAGGAAACCTTGGCCACGGGTTCCTCGTCGC
AGGTGGGACCCACGCTCGTGCTCCGCACCGTCACGTCAAGGATGGGAGAGGGAGGAGAGAGACCTCGTTGTCCATCGTTG
CGCTCCACGCCCGCCGAGCTCGTCGGCCAGGGGAGGAGGGCCGCTGGATGCTCGCTGGGTCGATGGGGAAGGTGGTGGGG
CTGAAGAAGCTTGCCGGCTTCCTTCGCCCGACGATGCCGGAGAAGGGAGAGGGGAGAGCCACCGACGGGGGCAGAGGACC
GGCGCTGTCGTGGGGCAGGTCGCGGCCCCGGCTGCTCCTGCGCCAGATCCGCACCGCCCGCTGTCCCTCTCTCCCGGGCC
GATTCCACGCCGCTGAGCTCGCCCTCCTTCGCTCCCGCTACCAGAGGCCGTCGCTCCTGACCTCGCCGTCCTCACTCCCG
CGCCAAGTCCATGTTGCCGACCTAGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23607.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis