Browse Element(s) Details


Os.27569.2.S1_at

Description gb:AK066619.1
DB_XREF= gi:32976637
TID=Os.27569.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073N16, full insert sequence.
FL= gb:AK066619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6658011/11RNA polymerase III RPC4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein
LOC_Os01g66560Os.7290.1.S1_s_at11/111+38977376..38981452expressed protein
LOC_Os01g66570OsAffx.23943.1.S1_s_at11/111+38982085..38983296Zinc finger, C2H2 type family protein
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66590Os.18459.2.S1_x_at9/111+39003090..39006527AS2, putative, expressed
LOC_Os01g66600Os.23604.1.S1_at11/111+39011341..39014946rhodanese-like domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27569.2.S1_at--631--991Chr01:38986458..38986482 (25 bp)
AGGTAATTACGTGTGCATAAGTGCA
LOC_Os01g66580
Os.27569.2.S1_at--1088--351Chr01:38986442..38986466 (25 bp)
ATAAGTGCATTGGTCAGCTGTGAGC
LOC_Os01g66580
Os.27569.2.S1_at--596--3391Chr01:38986428..38986452 (25 bp)
CAGCTGTGAGCTACAGTCCTGCAAT
LOC_Os01g66580
Os.27569.2.S1_at--877--9851Chr01:38986417..38986441 (25 bp)
TACAGTCCTGCAATGACTTGCCAGA
LOC_Os01g66580
Os.27569.2.S1_at--279--5691Chr01:38986403..38986427 (25 bp)
GACTTGCCAGATTAGTGTGCATAGC
LOC_Os01g66580
Os.27569.2.S1_at--810--7451Chr01:38986389..38986413 (25 bp)
GTGTGCATAGCTAGCAATGTGCATT
LOC_Os01g66580
Os.27569.2.S1_at--740--9791Chr01:38986363..38986387 (25 bp)
TAACTGTATTTGTAGCGGTTGTAAA
LOC_Os01g66580
Os.27569.2.S1_at--310--7471Chr01:38986335..38986359 (25 bp)
GTGTGCCTTTAGAAGATTTGCTGCT
LOC_Os01g66580
Os.27569.2.S1_at--375--6531Chr01:38986321..38986345 (25 bp)
GATTTGCTGCTTGTAGTAAATGAAT
LOC_Os01g66580
Os.27569.2.S1_at--480--2051Chr01:38986296..38986320 (25 bp)
ACTTAGCTTAGATTGTACTTATGGT
LOC_Os01g66580
Os.27569.2.S1_at--76--6551Chr01:38986247..38986271 (25 bp)
GATTTTTATGGAGATCTCACTAAAG
LOC_Os01g66580
Target Sequence 
AGGTAATTACGTGTGCATAAGTGCATTGGTCAGCTGTGAGCTACAGTCCTGCAATGACTTGCCAGATTAGTGTGCATAGC
TAGCAATGTGCATTTTAACTGTATTTGTAGCGGTTGTAAAATTGTGTGCCTTTAGAAGATTTGCTGCTTGTAGTAAATGA
ATACTTAGCTTAGATTGTACTTATGGTAGTATTGTTGATGTGTCATGTTATGATTTTTATGGAGATCTCACTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27569.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis