Browse Element(s) Details


Os.14437.2.S1_x_at

Description gb:AK119166.1
DB_XREF= gi:37988789
TID=Os.14437.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1099D03.17 (B1099D03.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F04, full insert sequence.
FL= gb:AK119166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g665208/11Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os05g321101/11COBRA-like protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66490Os.32786.1.S1_at11/111+38938284..38940719No apical meristem protein, expressed
LOC_Os01g66500Os.26952.1.S1_at11/111+38945587..38950685phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os01g66510Os.34130.1.S1_at10/111+38954595..38958776MLO-like protein 1, putative, expressed
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein
LOC_Os01g66560Os.7290.1.S1_s_at11/111+38977376..38981452expressed protein
LOC_Os01g66570OsAffx.23943.1.S1_s_at11/111+38982085..38983296Zinc finger, C2H2 type family protein
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0010215biological_processcellulose microfibril organization
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009897cellular_componentexternal side of plasma membrane
GO:0009930cellular_componentlongitudinal side of cell surface (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14437.2.S1_x_at--892--10851Chr01:38960742..38960766 (25 bp)
TTGGCGGAGCATGGGCTGATACATT
LOC_Os01g66520
Os.14437.2.S1_x_at--386--9851Chr01:38960508..38960532 (25 bp)
TACAATGATTGACTTCCCGCAGATG
LOC_Os01g66520
Os.14437.2.S1_x_at--124--5271NONE
GAATGCCCAGATGTTTTTTGATCGA
NONE
Os.14437.2.S1_x_at--1105--6151Chr01:38960243..38960266 (24 bp)
GAGGTTTCATCTTTCCTCAGAGAAA
LOC_Os01g66520
Os.14437.2.S1_x_at--1086--671Chr01:38960184..38960208 (25 bp)
ATGAGAATAGCAGGCCATCCTTTCT
LOC_Os01g66520
Os.14437.2.S1_x_at--849--8431Chr01:38960172..38960196 (25 bp)
GGCCATCCTTTCTGTCTATACAAAA
LOC_Os01g66520
Os.14437.2.S1_x_at--46--2451Chr01:38960151..38960175 (25 bp)
AAAAGGCTGCTGGTTCATTGGACAA
LOC_Os01g66520
Os.14437.2.S1_x_at--97--31Chr01:38960135..38960159 (25 bp)
ATTGGACAAGGAGCTAGCTGCCAGT
LOC_Os01g66520
Os.14437.2.S1_x_at--703--1551Chr01:38960120..38960144 (25 bp)
AGCTGCCAGTGGTTTCACCCGAAAA
LOC_Os01g66520
Os.14437.2.S1_x_at--704--8851NONE
TGATGTGGCTGTGAACTTAGTTACT
NONE
Os.14437.2.S1_x_at--672--5711Chr05:18638222..18638246 (25 bp)
GACTCCGTAATAATGTTCTGTATGA
LOC_Os05g32110
Target Sequence 
TTGGCGGAGCATGGGCTGATACATTGTGATTTTAACGAGTTCAATATCATGATTGATGATGATGAGAAAGTTACAATGAT
TGACTTCCCGCAGATGGTATCTGTTAAACATCGGAATGCCCAGATGTTTTTTGATCGAGATATTGAATGCATCTACAAAT
TCTTTAGGAAGAGGTTTCATCTTTCCTCAGAGAAATGTGAAGAACAGGATGGGTCAGACATTGATGATGATGAGAATAGC
AGGCCATCCTTTCTGTCTATACAAAAGGCTGCTGGTTCATTGGACAAGGAGCTAGCTGCCAGTGGTTTCACCCGAAAAGA
GCAAGTTGAGATGGACAAGTACATTGACCAAAATGCTGAAGAAGAGAGCTCAGATGATGATTCAACATCAGAACAAGATA
ATGAGGATGGTGATGATGTGGCTGTGAACTTAGTTACTGCAAACTAGATAATTACAGTTGCACCTTTTGTATGTTATAGC
AACCAGAAATTCAATTGAATTATATGACTTCCCTTCTTGTAGTACATGTATAGACTCCGTAATAATGTTCTGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14437.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis