Browse Element(s) Details


Os.50310.1.S1_at

Description gb:AK120651.1
DB_XREF= gi:37990274
TID=Os.50310.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157C10, full insert sequence.
FL= gb:AK120651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6654411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66500Os.26952.1.S1_at11/111+38945587..38950685phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os01g66510Os.34130.1.S1_at10/111+38954595..38958776MLO-like protein 1, putative, expressed
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein
LOC_Os01g66560Os.7290.1.S1_s_at11/111+38977376..38981452expressed protein
LOC_Os01g66570OsAffx.23943.1.S1_s_at11/111+38982085..38983296Zinc finger, C2H2 type family protein
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50310.1.S1_at--656--8251Chr01:38972245..38972269 (25 bp)
GGCAGGAGCGCCAGGATCTTCTCCT
LOC_Os01g66544
Os.50310.1.S1_at--975--431Chr01:38972230..38972254 (25 bp)
ATCTTCTCCTGCATCAGCGGCATGT
LOC_Os01g66544
Os.50310.1.S1_at--665--3551Chr01:38972219..38972243 (25 bp)
CATCAGCGGCATGTGATGCTTCAGG
LOC_Os01g66544
Os.50310.1.S1_at--828--6331Chr01:38972205..38972229 (25 bp)
GATGCTTCAGGAATCAGTGGGATGA
LOC_Os01g66544
Os.50310.1.S1_at--1038--7391Chr01:38972167..38972191 (25 bp)
GTGTTAATTTTGCTCGTGTTTTGGT
LOC_Os01g66544
Os.50310.1.S1_at--1130--10711Chr01:38972158..38972182 (25 bp)
TTGCTCGTGTTTTGGTCGAATTCAA
LOC_Os01g66544
Os.50310.1.S1_at--856--7031Chr01:38972110..38972134 (25 bp)
GTAAATTTCTACGTAGTTCGTGCAG
LOC_Os01g66544
Os.50310.1.S1_at--139--6951Chr01:38972098..38972122 (25 bp)
GTAGTTCGTGCAGTTTGTACTTCAA
LOC_Os01g66544
Os.50310.1.S1_at--243--271Chr01:38972056..38972080 (25 bp)
ATATGCATGGATTTGTTGTACGTCA
LOC_Os01g66544
Os.50310.1.S1_at--173--7351Chr01:38972010..38972034 (25 bp)
GTGAACGTGATTGAACTTGTCCTGA
LOC_Os01g66544
Os.50310.1.S1_at--221--2071Chr01:38971996..38972020 (25 bp)
ACTTGTCCTGATAATCTTATAGTAC
LOC_Os01g66544
Target Sequence 
GGCAGGAGCGCCAGGATCTTCTCCTGCATCAGCGGCATGTGATGCTTCAGGAATCAGTGGGATGAAGTGGTAGTTCTTGT
GTTAATTTTGCTCGTGTTTTGGTCGAATTCAAGGTAGGATTCGGCGGGGTGGAGAGTAAATTTCTACGTAGTTCGTGCAG
TTTGTACTTCAAACAGATTCGAAGTGTATATATGCATGGATTTGTTGTACGTCAAGATGTAAATAGATGGTGATGGTGAA
CGTGATTGAACTTGTCCTGATAATCTTATAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis