Browse Element(s) Details


Os.34782.1.S1_at

Description gb:AK070163.1
DB_XREF= gi:32980187
TID=Os.34782.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1099D03.18 (B1099D03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046H19, full insert sequence.
FL= gb:AK070163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6653011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66490Os.32786.1.S1_at11/111+38938284..38940719No apical meristem protein, expressed
LOC_Os01g66500Os.26952.1.S1_at11/111+38945587..38950685phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os01g66510Os.34130.1.S1_at10/111+38954595..38958776MLO-like protein 1, putative, expressed
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein
LOC_Os01g66560Os.7290.1.S1_s_at11/111+38977376..38981452expressed protein
LOC_Os01g66570OsAffx.23943.1.S1_s_at11/111+38982085..38983296Zinc finger, C2H2 type family protein
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34782.1.S1_at--270--1531Chr01:38964435..38964459 (25 bp)
AGCAGTAGCAGTCGCAGCACATCGG
LOC_Os01g66530
Os.34782.1.S1_at--419--5411Chr01:38964482..38964506 (25 bp)
GAAGCGGATCAGCTTATCGTCCTAA
LOC_Os01g66530
Os.34782.1.S1_at--114--7271Chr01:38964500..38964524 (25 bp)
GTCCTAAGCGGACACATATGGCGGC
LOC_Os01g66530
Os.34782.1.S1_at--643--8871Chr01:38964638..38964662 (25 bp)
TGATGGCGTTCGTCTGCGTGACCGC
LOC_Os01g66530
Os.34782.1.S1_at--728--9451Chr01:38964797..38964821 (25 bp)
TCGGCTCGTCTTGCTTGTAGATAGA
LOC_Os01g66530
Os.34782.1.S1_at--244--431Chr01:38964857..38964881 (25 bp)
CTTCCACAGACCACAGTTCATTTAG
LOC_Os01g66530
Os.34782.1.S1_at--769--1371Chr01:38964902..38964926 (25 bp)
AGACGGTTAGTTCTCTATTGCTAGA
LOC_Os01g66530
Os.34782.1.S1_at--321--3171Chr01:38964963..38964987 (25 bp)
AATTGATTACTGCTGATCCGATAGA
LOC_Os01g66530
Os.34782.1.S1_at--720--551Chr01:38964978..38965002 (25 bp)
ATCCGATAGATCGACCCGGGCTAAA
LOC_Os01g66530
Os.34782.1.S1_at--518--4191Chr01:38964992..38965016 (25 bp)
CCCGGGCTAAACCTGCAAAACACAT
LOC_Os01g66530
Os.34782.1.S1_at--17--9031Chr01:38965005..38965029 (25 bp)
TGCAAAACACATGCCCTTCTGAAGA
LOC_Os01g66530
Target Sequence 
AGCAGTAGCAGTCGCAGCACATCGGCTGGTGGTGATGGATCAGAGGAGAAGCGGATCAGCTTATCGTCCTAAGCGGACAC
ATATGGCGGCGGCGGAGGACGAGCACCGGCGGCCGGGGACGTCGAGCCGCCGCCGGGTGGCGCCGACGCCGACGACGCAG
ACGCAGACGCAGACGGCGCCCGGCTACTTCACCGTCGAGCTGGTGATGGCGTTCGTCTGCGTGACCGCGTCGCTCGTGCT
GCTGCCGCTCGTCCTGCCGCCGTTGCCGCCGCCGCCGTCGCTGCTGCTGGTGGTGCCGGTGTGCCTGCTCGCCGTCCTGG
TGGCCATGGCGTTCGTCCCGCTCGACGCGCAGAGCAACGTCGTCGGCTCGTCTTGCTTGTAGATAGAGAAAATGAAATTC
TTTTCTTGCTTTTTTTTTTTATCTTCCACAGACCACAGTTCATTTAGGATTTTAGGTTAGCGTAAAGAGACGGTTAGTTC
TCTATTGCTAGATTAGTGGGGACGATGAGTTTGTAATTACTGGGCTGTAATTGATTACTGCTGATCCGATAGATCGACCC
GGGCTAAACCTGCAAAACACATGCCCTTCTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis