Browse Element(s) Details


Os.32786.1.S1_at

Description gb:AK102902.1
DB_XREF= gi:32988111
TID=Os.32786.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434C04.28 (P0434C04.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113D13, full insert sequence.
FL= gb:AK102902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6649011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66460NANA1+38912496..38915589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66470NANA1+38915776..38918601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66480NANA1+38921299..38921592hypothetical protein
LOC_Os01g66490Os.32786.1.S1_at11/111+38938284..38940719No apical meristem protein, expressed
LOC_Os01g66500Os.26952.1.S1_at11/111+38945587..38950685phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os01g66510Os.34130.1.S1_at10/111+38954595..38958776MLO-like protein 1, putative, expressed
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32786.1.S1_at--307--1751Chr01:38940119..38940143 (25 bp)
ACCTGCAGAATTCCTCGATGGCTTC
LOC_Os01g66490
Os.32786.1.S1_at--185--3131Chr01:38940170..38940194 (25 bp)
AATTTCAGCAAGACTTCGCGGCGGC
LOC_Os01g66490
Os.32786.1.S1_at--307--9351Chr01:38940185..38940209 (25 bp)
TCGCGGCGGCATTGTACCAGCAGTA
LOC_Os01g66490
Os.32786.1.S1_at--722--9891Chr01:38940208..38940232 (25 bp)
TACTCCAAGAACACGAGCGGTGCCT
LOC_Os01g66490
Os.32786.1.S1_at--265--4491Chr01:38940355..38940379 (25 bp)
GCCGGCAGCCACAACTATAGTCAAT
LOC_Os01g66490
Os.32786.1.S1_at--441--10171Chr01:38940370..38940394 (25 bp)
TATAGTCAATTCCTTCACCTGCCTA
LOC_Os01g66490
Os.32786.1.S1_at--820--5731Chr01:38940502..38940526 (25 bp)
GACTGGAATAATCCGATCCCCGAGG
LOC_Os01g66490
Os.32786.1.S1_at--306--10191Chr01:38940574..38940598 (25 bp)
TATAGCTACAGTTCATGCACGCGTG
LOC_Os01g66490
Os.32786.1.S1_at--455--5091Chr01:38940590..38940614 (25 bp)
GCACGCGTGCATGGCATTCTGATCA
LOC_Os01g66490
Os.32786.1.S1_at--774--3591Chr01:38940604..38940628 (25 bp)
CATTCTGATCAGATGGTACCACCAT
LOC_Os01g66490
Os.32786.1.S1_at--1033--4171Chr01:38940678..38940702 (25 bp)
CCCACTCTCTGGTTCACAGTTATTA
LOC_Os01g66490
Target Sequence 
ACCTGCAGAATTCCTCGATGGCTTCCGCTGCCGGCGGCGATCAGCAGCAGCAATTTCAGCAAGACTTCGCGGCGGCATTG
TACCAGCAGTACTCCAAGAACACGAGCGGTGCCTTCGCCTCCACGTACTCGCTGCTCAACCTCGTCAACGCGGCATCCAT
GGGCAGCTCCGCCGCTGCCATTGATGAGCTGAGCTCGCTGGTGGGCCACGGCACGCCGTCCTACATTAACCCCGCGGCCG
GCAGCCACAACTATAGTCAATTCCTTCACCTGCCTACGACGCCGTCGTCGCATCAACCAACGCCGGCGCCGCTCGGGACG
ACGACGGCGGCAGCGGCGGCGACGCTGCCGATGTCGCTCGCCGCCTTCTCCGACAGGATCTGGGACTGGAATAATCCGAT
CCCCGAGGCCGGAGNNNNNNNNNNCNNNNNCANNANNNNNTTCAAGTGAATCAGCTATAGCTACAGTTCATGCACGCGTG
CATGGCATTCTGATCAGATGGTACCACCATGTACTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTC
CCACTCTCTGGTTCACAGTTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis