Browse Element(s) Details


OsAffx.23941.2.S1_at

Description tigr:9629.m06599
TID=OsAffx.23941.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g665442/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66500Os.26952.1.S1_at11/111+38945587..38950685phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os01g66510Os.34130.1.S1_at10/111+38954595..38958776MLO-like protein 1, putative, expressed
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein
LOC_Os01g66560Os.7290.1.S1_s_at11/111+38977376..38981452expressed protein
LOC_Os01g66570OsAffx.23943.1.S1_s_at11/111+38982085..38983296Zinc finger, C2H2 type family protein
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23941.2.S1_at--68--9211Chr01:38970652..38971056 (25 bp)
TCCACCGGAAAGGTATAAGACGCTT
LOC_Os01g66544
OsAffx.23941.2.S1_at--248--271Chr01:38970650..38971054 (25 bp)
CACCGGAAAGGTATAAGACGCTTCA
LOC_Os01g66544
OsAffx.23941.2.S1_at--1042--5551NONE
GAAAGGTATAAGACGCTTCAGCGGC
NONE
OsAffx.23941.2.S1_at--820--2291NONE
AAAGGTATAAGACGCTTCAGCGGCT
NONE
OsAffx.23941.2.S1_at--41--1011NONE
AGGTATAAGACGCTTCAGCGGCTCA
NONE
OsAffx.23941.2.S1_at--434--7851NONE
GGTATAAGACGCTTCAGCGGCTCAA
NONE
OsAffx.23941.2.S1_at--130--6891NONE
GTATAAGACGCTTCAGCGGCTCAAG
NONE
OsAffx.23941.2.S1_at--583--10171NONE
TATAAGACGCTTCAGCGGCTCAAGC
NONE
OsAffx.23941.2.S1_at--272--351NONE
ATAAGACGCTTCAGCGGCTCAAGCT
NONE
OsAffx.23941.2.S1_at--633--9791NONE
TAAGACGCTTCAGCGGCTCAAGCTG
NONE
OsAffx.23941.2.S1_at--777--5791NONE
GACGCTTCAGCGGCTCAAGCTGGTC
NONE
Target Sequence 
TCCACCGGAAAGGTATAAGACGCTTCAGCGGCTCAAGCTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23941.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis