Browse Element(s) Details


OsAffx.23943.2.S1_at

Description tigr:9629.m06603
TID=OsAffx.23943.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA polymerase III RPC4, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6658011/11RNA polymerase III RPC4 family protein, expressed
LOC_Os03g242101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein
LOC_Os01g66560Os.7290.1.S1_s_at11/111+38977376..38981452expressed protein
LOC_Os01g66570OsAffx.23943.1.S1_s_at11/111+38982085..38983296Zinc finger, C2H2 type family protein
LOC_Os01g66580OsAffx.23943.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66580Os.27569.2.S1_at11/111+38986083..38988159RNA polymerase III RPC4 family protein, expressed
LOC_Os01g66590Os.18459.2.S1_x_at9/111+39003090..39006527AS2, putative, expressed
LOC_Os01g66600Os.23604.1.S1_at11/111+39011341..39014946rhodanese-like domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23943.2.S1_at--734--3591Chr01:38987187..38987211 (25 bp)
CATTGCTCTGGATAATTGCCCAGTA
LOC_Os01g66580
OsAffx.23943.2.S1_at--1079--51Chr01:38987173..38987197 (25 bp)
ATTGCCCAGTACATTCCACAGGAAT
LOC_Os01g66580
OsAffx.23943.2.S1_at--323--4891Chr01:38986223..38986247 (25 bp)
GCTTTTATCGAGATGTCATTTCCCA
LOC_Os01g66580
OsAffx.23943.2.S1_at--598--6031Chr01:38986214..38986238 (25 bp)
GAGATGTCATTTCCCACTGGCTTGC
LOC_Os01g66580
OsAffx.23943.2.S1_at--1109--1931Chr01:38986199..38986223 (25 bp)
ACTGGCTTGCCCAAACGACATGTAG
LOC_Os01g66580
OsAffx.23943.2.S1_at--34--2391Chr01:38986187..38986211 (25 bp)
AAACGACATGTAGCCCAGGGACCAG
LOC_Os01g66580
OsAffx.23943.2.S1_at--60--3472Chr03:13745353..13745696 (25 bp)
CAGGGACCAGGCAGATACACTCATA
LOC_Os03g24210
OsAffx.23943.2.S1_at--799--6471Chr01:38986159..38986183 (25 bp)
GATACACTCATACACGGCCATACGA
LOC_Os01g66580
OsAffx.23943.2.S1_at--1073--1891Chr01:38986146..38986170 (25 bp)
ACGGCCATACGACGGCCCAATTAAG
LOC_Os01g66580
OsAffx.23943.2.S1_at--1080--5731Chr01:38986136..38986160 (25 bp)
GACGGCCCAATTAAGGCAGCAGGCA
LOC_Os01g66580
OsAffx.23943.2.S1_at--642--1531Chr01:38986119..38986143 (25 bp)
AGCAGGCACGTCGACTGGGCTGACC
LOC_Os01g66580
Target Sequence 
CATTGCTCTGGATAATTGCCCAGTACATTCCACAGGAATCTCATAAGAATGAGCAAGGTGACACGAGAAGAATGCTCCTA
TTCCAGTTGCCAAAATCTCTTCCGTTGCCAAGAATATCCGCTGCAGTTGAAAGGAATGGAAAAGCCAGGGACAAGGAGGT
GAAAGAAGGATCCAACTTGAAAGAATTGCCACAAGGATATTTGGGCAAAATGGTGGTGTACAAGAGCGGCAAGATCAAGA
TGAAGTTGGGGGATGTCATGTTTGATGTGAACCCAGGAGAAGAGTGTAGGATGGCACAACATGTGGCTGCTATCAACACC
AAAGAGAAGCATTGTTGTTTACTTGGCGAGATCGAGAGCCGGCATGTCGTTGTGACTCCAGATGTGGACTCGCTGCTGTT
GAATGACAATAGAGATCTCACTAAAGCTTTTATCGAGATGTCATTTCCCACTGGCTTGCCCAAACGACATGTAGCCCAGG
GACCAGGCAGATACACTCATACACGGCCATACGACGGCCCAATTAAGGCAGCAGGCACGTCGACTGGGCTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23943.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis