Browse Element(s) Details


OsAffx.2423.1.S1_at

Description gb:NM_190227.1
DB_XREF= gi:34907537
GEN=B1078G07.7
TID=OsAffx.2423.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.7 (B1078G07.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g667508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed
LOC_Os01g66780NANA1+39104890..39105914hypothetical protein
LOC_Os01g66790NANA1+39106815..39112909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66800Os.46039.1.S1_at10/111+39114212..39115266hypothetical protein
LOC_Os01g66810Os.6266.1.S1_x_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66810Os.6266.1.S1_s_at11/111+39117252..39118003hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2423.1.S1_at--975--8531Chr01:39094612..39094636 (25 bp)
TGGAGCTCTGCACTGTTGGAGAACT
LOC_Os01g66750
OsAffx.2423.1.S1_at--759--2811Chr01:39094562..39094586 (25 bp)
AAGATTCGCTTTTTCATGTGGCTCG
LOC_Os01g66750
OsAffx.2423.1.S1_at--168--6231Chr01:39094492..39094516 (25 bp)
GATGGCCACACTCTGATTGCTGCAA
LOC_Os01g66750
OsAffx.2423.1.S1_at--699--71Chr01:39094477..39094501 (25 bp)
ATTGCTGCAATCTGTGCTCGCGGAA
LOC_Os01g66750
OsAffx.2423.1.S1_at--1092--8151Chr01:39094456..39094480 (25 bp)
GGAAACCTGAAGACTGCACACATCT
LOC_Os01g66750
OsAffx.2423.1.S1_at--1036--5111Chr01:39094441..39094465 (25 bp)
GCACACATCTGTTCACCAAATGCGA
LOC_Os01g66750
OsAffx.2423.1.S1_at--542--7671Chr01:39094356..39094379 (24 bp)
GGGATTGGATGATCTCAGCCTCACA
LOC_Os01g66750
OsAffx.2423.1.S1_at--1074--7971Chr01:39094324..39094348 (25 bp)
GGATGCAGGCTAGACGATGTTTTCG
LOC_Os01g66750
OsAffx.2423.1.S1_at--176--4131Chr01:39089673..39089697 (25 bp)
CGCTCCGATTATTCCGATACTGTAG
NONE
OsAffx.2423.1.S1_at--1111--6931Chr01:39089652..39089676 (25 bp)
GTAGTCACCGTAGCTTGTGCTGCAA
NONE
OsAffx.2423.1.S1_at--82--2471Chr01:39089056..39089080 (25 bp)
AACACAACGATGAACTGCTCAGGAG
NONE
Target Sequence 
TGGAGCTCTGCACTGTTGGAGAACTGATATGGCACACAAAAGCGCCAGCCAAGATTCGCTTTTTCATGTGGCTCGCTGCG
AAGGGGCGCTGCCTGACAGCAGATAACCTGCAAAAGAGAGGATGGCCACACTCTGATTGCTGCAATCTGTGCTCGCGGAA
ACCTGAAGACTGCACACATCTGTTCACCAAATGCGATTACACAGTGAGGGATTGGATGATCTCAGCCTCACAGCTTGGTG
GATGCAGGCTAGACGATGTTTTCGGGAATGCTACAGAGGCAATTTCGACAGGGGATGCTAATNTNNATNNNNNTNANATT
TGGTCGCCGGTTCCTTCGGCCGACCCAGCAAAAACAGTGTCCGTAACTAAGAAAGAAGAGGCAGTGAGAGATGTACAAGG
CTCCCACAAAACCCACGACGAACCCGACGGCCGCTCCGATTATTCCGATACTGTAGTCACCGTAGCTTGTGCTGCAACTA
TCAAACGGCATTGGATATCAAGTTCAGAACCAAAACACAACGATGAACTGCTCAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis