Browse Element(s) Details


Os.6266.1.S1_s_at

Description gb:AU166872
DB_XREF= gi:12405271
DB_XREF=AU166872
CLONE=C51684
TID=Os.6266.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.12 (B1078G07.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5024011/11hypothetical protein
LOC_Os01g6681011/11hypothetical protein
LOC_Os02g454605/11Uncharacterized conserved protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein
LOC_Os05g50220Os.10824.1.S1_at9/115+28696786..28699536Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g50230Os.55617.1.S1_at11/115+28703662..28704897expressed protein
LOC_Os05g50240Os.6266.1.S1_s_at11/115+28707649..28708433hypothetical protein
LOC_Os05g50250Os.51338.1.S1_at11/115+28712194..28717965NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260Os.8509.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_x_at11/115+28718592..28721019Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6266.1.S1_s_at--180--6693Chr01:39117296..39117320 (25 bp)
GTTCCTCAAGATCGACATCTTGCCC
LOC_Os01g66810
Os.6266.1.S1_s_at--1051--2793Chr01:39117303..39117327 (25 bp)
AAGATCGACATCTTGCCCGAGGCTC
LOC_Os01g66810
Os.6266.1.S1_s_at--395--10633Chr01:39117315..39117339 (25 bp)
TTGCCCGAGGCTCTCCGCGGAAACA
LOC_Os01g66810
Os.6266.1.S1_s_at--380--4813Chr01:39117324..39117348 (25 bp)
GCTCTCCGCGGAAACATCGATCCAA
LOC_Os01g66810
Os.6266.1.S1_s_at--960--4133Chr01:39117330..39117354 (25 bp)
CGCGGAAACATCGATCCAACAAGTT
LOC_Os01g66810
Os.6266.1.S1_s_at--216--5532Chr01:39117334..39117358 (25 bp)
GAAACATCGATCCAACAAGTTGTCA
LOC_Os01g66810
Os.6266.1.S1_s_at--1131--5512Chr01:39117442..39117466 (25 bp)
GAAAAACAGAACAAGCAGTCCCGCC
LOC_Os01g66810
Os.6266.1.S1_s_at--1157--2112Chr01:39117447..39117471 (25 bp)
ACAGAACAAGCAGTCCCGCCTGAGT
LOC_Os01g66810
Os.6266.1.S1_s_at--1029--2712Chr01:39117454..39117478 (25 bp)
AAGCAGTCCCGCCTGAGTCCTTCGT
LOC_Os01g66810
Os.6266.1.S1_s_at--430--8852Chr01:39117467..39117491 (25 bp)
TGAGTCCTTCGTCGGCAACCTCCAG
LOC_Os01g66810
Os.6266.1.S1_s_at--49--8932Chr01:39117508..39117532 (25 bp)
TGAGCCGCCCATGCGAGCCGTTCTT
LOC_Os01g66810
Target Sequence 
GTTCCTCAAGATCGACATCTTGCCCGAGGCTCTCCGCGGAAACATCGATCCAACAAGTTGTCAGGAATATCTGAACAATC
TCTGGAGAAAAACAGAACAAGCAGTCCCGCCTGAGTCCTTCGTCGGCAACCTCCAGCTTAGCGGCAAGCCTNTGAGCCGC
CCATGCGAGCCGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6266.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis