Browse Element(s) Details


Os.55617.1.S1_at

Description gb:AK108425.1
DB_XREF= gi:32993634
TID=Os.55617.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-A06, full insert sequence.
FL= gb:AK108425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5023011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein
LOC_Os05g50220Os.10824.1.S1_at9/115+28696786..28699536Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g50230Os.55617.1.S1_at11/115+28703662..28704897expressed protein
LOC_Os05g50240Os.6266.1.S1_s_at11/115+28707649..28708433hypothetical protein
LOC_Os05g50250Os.51338.1.S1_at11/115+28712194..28717965NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260Os.8509.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_x_at11/115+28718592..28721019Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55617.1.S1_at--155--1431Chr05:28704144..28704168 (25 bp)
AGAACGACGTCGAACACTTCAAGCC
LOC_Os05g50230
Os.55617.1.S1_at--411--4371Chr05:28704032..28704056 (25 bp)
CCACAGGATAGCTTACGGCGCTAAG
LOC_Os05g50230
Os.55617.1.S1_at--83--5771Chr05:28703960..28703984 (25 bp)
GACGTTCTTGCCTTACCGGGAAGAG
LOC_Os05g50230
Os.55617.1.S1_at--1001--3352Chr03:14171717..14172042 (25 bp)
CACCCGCATCCGTTCTAATTAATTT
NONE
Os.55617.1.S1_at--1098--9771Chr05:28703809..28703833 (25 bp)
TTACGGCTTAATGTGGACTATGAAC
LOC_Os05g50230
Os.55617.1.S1_at--82--5331Chr05:28703779..28703803 (25 bp)
GAAGTCAGTGACTTAACTGGCCTTT
LOC_Os05g50230
Os.55617.1.S1_at--153--10491Chr05:28703767..28703791 (25 bp)
TTAACTGGCCTTTGTCTTTCTCGGA
LOC_Os05g50230
Os.55617.1.S1_at--1054--9491Chr05:28703749..28703773 (25 bp)
TCTCGGACAGAGTGTGAACGCCTAC
LOC_Os05g50230
Os.55617.1.S1_at--980--7691Chr05:28703724..28703748 (25 bp)
GGGTGGCGCGAGAAAAACCTCCATT
LOC_Os05g50230
Os.55617.1.S1_at--471--10031Chr05:28703700..28703724 (25 bp)
TAGACAAGGTTTTGTACACCCGAGT
LOC_Os05g50230
Os.55617.1.S1_at--105--2171Chr05:28703685..28703709 (25 bp)
ACACCCGAGTTTGTACATGTGCAAT
LOC_Os05g50230
Target Sequence 
AGAACGACGTCGAACACTTCAAGCCCAAACCCAAACCACCCAAGCCGACGCCGGCAAGCGGCCGCAAGACGGCACAGGCC
GCCGCCGCAGAGATCGACACGGTCGCCGCCATCCACAGGATAGCTTACGGCGCTAAGGGCGGTGGCGCCACCGGCACCAG
CGCCGGCGGGGGCACGCCGCGGCGGACGTTCTTGCCTTACCGGGAAGAGCTCGTCGGCCTCTTCGCCAACGTGAACGGCA
TCAGCCGCAGCCACCCGCATCCGTTCTAATTAATTTTACAGTGTTTGGTTCTGCATATATTGATAGTCAATTAATCACGT
GATTAGGTTAATTAATTACGGCTTAATGTGGACTATGAACAGTGTGAAGTCAGTGACTTAACTGGCCTTTGTCTTTCTCG
GACAGAGTGTGAACGCCTACGGGTGGCGCGAGAAAAACCTCCATTAGACAAGGTTTTGTACACCCGAGTTTGTACATGTG
CAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis