Browse Element(s) Details


OsAffx.15177.1.S1_x_at

Description tigr:9633.m04728
TID=OsAffx.15177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein F20B24.8 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5026011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein
LOC_Os05g50220Os.10824.1.S1_at9/115+28696786..28699536Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g50230Os.55617.1.S1_at11/115+28703662..28704897expressed protein
LOC_Os05g50240Os.6266.1.S1_s_at11/115+28707649..28708433hypothetical protein
LOC_Os05g50250Os.51338.1.S1_at11/115+28712194..28717965NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260Os.8509.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_x_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50270Os.53593.1.S1_at11/115+28734333..28735599GATA zinc finger family protein, expressed
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed
LOC_Os05g50290OsAffx.27392.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50290Os.2301.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15177.1.S1_x_at--351--9511Chr05:28719873..28719897 (25 bp)
TCTCTGTGATGCAGGCGATGATTGT
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--646--6591Chr05:28719854..28719878 (25 bp)
GATTGTGTTTCCATCCAGACAGGCT
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--72--5011Chr05:28719746..28719770 (25 bp)
GCATGTGTATCCAATGTCACCGTAA
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--245--3412Chr09:9499669..9499802 (24 bp)
CAGCAGTGGCGGTTTTAGGTGTTCA
NONE
OsAffx.15177.1.S1_x_at--387--4471Chr05:28719406..28719430 (25 bp)
GCCTGCCCATTTTGCATGCAGTGAT
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--932--291Chr05:28719383..28719407 (25 bp)
ATAGCTCGCCTTGTTCAGAGATCAC
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--1140--6031Chr05:28719366..28719390 (25 bp)
GAGATCACTCTTACTGGAATACAGC
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--788--8211Chr05:28719351..28719375 (25 bp)
GGAATACAGCTCAAACCCCTGATAG
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--313--2611Chr05:28719338..28719362 (25 bp)
AACCCCTGATAGTGCCACAGTATCA
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--1017--1191Chr05:28719320..28719344 (25 bp)
AGTATCACCTGTACAACCCATTCTG
LOC_Os05g50260
OsAffx.15177.1.S1_x_at--730--3591Chr05:28719302..28719326 (25 bp)
CATTCTGCTGGCAAGCCTTTGGAGA
LOC_Os05g50260
Target Sequence 
TCTCTGTGATGCAGGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGAC
CAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTC
AACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTC
AAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAA
CATCAGCAGTGGCGGTTTTAGGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCCATTTTGCATGC
AGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCAAACCCCTGATAGTGCCACAGTATCACCTGTA
CAACCCATTCTGCTGGCAAGCCTTTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15177.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis