Browse Element(s) Details


Os.53593.1.S1_at

Description gb:AK101287.1
DB_XREF= gi:32986496
TID=Os.53593.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033F09, full insert sequence.
FL= gb:AK073464.1 gb:AK101287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5027011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50250Os.51338.1.S1_at11/115+28712194..28717965NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260Os.8509.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_x_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50270Os.53593.1.S1_at11/115+28734333..28735599GATA zinc finger family protein, expressed
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed
LOC_Os05g50290OsAffx.27392.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50290Os.2301.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50300Os.54669.1.S1_at11/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50300OsAffx.4322.1.S1_x_at2/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50310Os.57347.1.S1_at11/115+28752502..28753597ZF-HD protein dimerisation region containing protein, expressed
LOC_Os05g50320OsAffx.27393.1.S1_at11/115+28754132..28754375hypothetical protein
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009735biological_processresponse to cytokinin stimulus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53593.1.S1_at--1066--8651Chr05:28735303..28735327 (25 bp)
TGTGGCCGGAGCGAGCTAGCCTCTA
LOC_Os05g50270
Os.53593.1.S1_at--455--4291Chr05:28735322..28735346 (25 bp)
CCTCTACCACTACAACTAGCTATAG
LOC_Os05g50270
Os.53593.1.S1_at--267--5911Chr05:28735377..28735401 (25 bp)
GAGAAGGGAAGCTGCACCGTTTTTT
LOC_Os05g50270
Os.53593.1.S1_at--510--8151Chr05:28735405..28735429 (25 bp)
GGAACATTTTGTACGGTCGCACGCT
LOC_Os05g50270
Os.53593.1.S1_at--1155--1831Chr05:28735425..28735449 (25 bp)
ACGCTCCCGGATTGATCGAACTGTA
LOC_Os05g50270
Os.53593.1.S1_at--258--5471Chr05:28735442..28735466 (25 bp)
GAACTGTATGCATCTGCTGTGCTGT
LOC_Os05g50270
Os.53593.1.S1_at--169--5671Chr05:28735489..28735513 (25 bp)
GACTCTGATCTTGAAACGAACCGTG
LOC_Os05g50270
Os.53593.1.S1_at--294--1851Chr05:28735504..28735528 (25 bp)
ACGAACCGTGATCATTTCATTCATT
LOC_Os05g50270
Os.53593.1.S1_at--380--2111Chr05:28735537..28735561 (25 bp)
ACATGTAGCTGTGCAAGGTCATCTT
LOC_Os05g50270
Os.53593.1.S1_at--398--1031Chr05:28735552..28735576 (25 bp)
AGGTCATCTTGCTCGGAAAATTCAT
LOC_Os05g50270
Os.53593.1.S1_at--251--372Chr05:28735575..28735599 (25 bp)
ATAATCTTCCAATCTCTTGTGCTGC
LOC_Os05g50270
Target Sequence 
TGTGGCCGGAGCGAGCTAGCCTCTACCACTACAACTAGCTATAGGCGATTAACTAGTGTAGCATTAGCGTTGGGGAGAAG
GGAAGCTGCACCGTTTTTTTGGGGAACATTTTGTACGGTCGCACGCTCCCGGATTGATCGAACTGTATGCATCTGCTGTG
CTGTGTTGCACGCTAGCTAGCTAGATGACTCTGATCTTGAAACGAACCGTGATCATTTCATTCATTTGGAATGAACATGT
AGCTGTGCAAGGTCATCTTGCTCGGAAAATTCATAATCTTCCAATCTCTTGTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis