Browse Element(s) Details


Os.50510.1.S1_at

Description gb:AK121528.1
DB_XREF= gi:37991151
TID=Os.50510.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030I07, full insert sequence.
FL= gb:AK121528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5033010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50270Os.53593.1.S1_at11/115+28734333..28735599GATA zinc finger family protein, expressed
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed
LOC_Os05g50290OsAffx.27392.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50290Os.2301.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50300Os.54669.1.S1_at11/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50300OsAffx.4322.1.S1_x_at2/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50310Os.57347.1.S1_at11/115+28752502..28753597ZF-HD protein dimerisation region containing protein, expressed
LOC_Os05g50320OsAffx.27393.1.S1_at11/115+28754132..28754375hypothetical protein
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50510.1.S1_at--145--9951Chr05:28755244..28755268 (25 bp)
TACGCACGACGCGACGGACTGGTGC
LOC_Os05g50330
Os.50510.1.S1_at--996--7931NONE
GGATTTCAGGCGTTATTATGACTCA
NONE
Os.50510.1.S1_at--991--371Chr05:28757227..28757251 (25 bp)
ATCAACACTACTACCGTGGTGACCT
LOC_Os05g50330
Os.50510.1.S1_at--806--1771Chr05:28757239..28757263 (25 bp)
ACCGTGGTGACCTGTGATTTTCTGG
LOC_Os05g50330
Os.50510.1.S1_at--971--7331Chr05:28757252..28757276 (25 bp)
GTGATTTTCTGGAGGGTTGTTCCCT
LOC_Os05g50330
Os.50510.1.S1_at--738--10571Chr05:28757280..28757304 (25 bp)
TTCTCTGCGAGGTTCCATTCCATAA
LOC_Os05g50330
Os.50510.1.S1_at--381--1011Chr05:28757289..28757313 (25 bp)
AGGTTCCATTCCATAAGCTCAAGAC
LOC_Os05g50330
Os.50510.1.S1_at--677--4831Chr05:28757305..28757329 (25 bp)
GCTCAAGACAAACCTGCTGTCCGAT
LOC_Os05g50330
Os.50510.1.S1_at--299--9131Chr05:28757319..28757343 (25 bp)
TGCTGTCCGATAGGCAGACCTAAAA
LOC_Os05g50330
Os.50510.1.S1_at--246--2911Chr05:28757359..28757383 (25 bp)
AAGGCAGTCCTAATTACTCCTACTC
LOC_Os05g50330
Os.50510.1.S1_at--133--3691Chr05:28757378..28757402 (25 bp)
CTACTCTACATCACCCGAAAGTATC
LOC_Os05g50330
Target Sequence 
TACGCACGACGCGACGGACTGGTGCGTCGTGGCGGACAGGTTTGAGGTGGATCCATGGCGACGGGTCGGTGGAGAACAGG
ACCTGCAGAGCGGCGGCGGCGCCGTGAGGCTCAGCTTCGAGACGCACCACGGCGGCGGCGTGGCACCTTCGCCGGAGTTC
GCGGCGTGCGCGGCGAGCTCCTGCAGCGCGGAAATCATGGTGTTGCTGCTCCTGCAGCGCGGCGAGCTCCTGGTGCACCA
TGACCGGCCGAGCCATCACCACCGCCGTTACTTCCCAACGCCGCAACCAGTCGAAGCCGCCGCCGCAGTTGAAGTTGGAT
GGGGATTTCAGGCGTTATTATGACTCAAGAAACACTATTCGAGAATCAACACTACTACCGTGGTGACCTGTGATTTTCTG
GAGGGTTGTTCCCTGCCTTCTCTGCGAGGTTCCATTCCATAAGCTCAAGACAAACCTGCTGTCCGATAGGCAGACCTAAA
AGTGTTATACGAATGTAAGGCAGTCCTAATTACTCCTACTCTACATCACCCGAAAGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis