Browse Element(s) Details


Os.49140.1.S1_at

Description gb:AK107480.1
DB_XREF= gi:32992689
TID=Os.49140.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C01, full insert sequence.
FL= gb:AK107480.1 gb:AK063417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5037011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein
LOC_Os05g50380Os.4166.1.S1_at11/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50380Os.53740.1.S1_s_at1/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein
LOC_Os05g50400OsAffx.15180.1.S1_at11/115+28800293..28801144hypothetical protein
LOC_Os05g50410Os.33045.1.S1_a_at11/115+28806350..28813611N terminus of Rad21/Rec8 like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49140.1.S1_at--936--1451Chr05:28784990..28785014 (25 bp)
AGAAGTCTTGAGTCACGGTAACCAG
LOC_Os05g50370
Os.49140.1.S1_at--481--8051Chr05:28785108..28785132 (25 bp)
GGAGATGTTACAAGTGCTGCTAATA
LOC_Os05g50370
Os.49140.1.S1_at--1062--3111Chr05:28785156..28785180 (25 bp)
AATTCAAAAGGCCAGGCGTCTTCCT
LOC_Os05g50370
Os.49140.1.S1_at--971--4631Chr05:28785171..28785195 (25 bp)
GCGTCTTCCTCTTCAGAAATGCTAA
LOC_Os05g50370
Os.49140.1.S1_at--1147--8491Chr05:28785197..28785221 (25 bp)
TGGCAGACAGCACTTGCCTCAAGAT
LOC_Os05g50370
Os.49140.1.S1_at--148--2811Chr05:28785217..28785241 (25 bp)
AAGATGCTGGACCTGCTATTTCTCA
LOC_Os05g50370
Os.49140.1.S1_at--555--4871Chr05:28785231..28785255 (25 bp)
GCTATTTCTCAGACATCTAACGGAA
LOC_Os05g50370
Os.49140.1.S1_at--1158--3791Chr05:28785246..28785270 (25 bp)
TCTAACGGAACTTTCCCTAGTCTTG
LOC_Os05g50370
Os.49140.1.S1_at--635--471Chr05:28785422..28785446 (25 bp)
ATCTGCAGAAGGTCATATCCCATCT
LOC_Os05g50370
Os.49140.1.S1_at--221--551Chr05:28785438..28785462 (25 bp)
ATCCCATCTTCTGCTGATATATCAA
LOC_Os05g50370
Os.49140.1.S1_at--497--3291Chr05:28785536..28785560 (25 bp)
CAAAGAGGCTTCTCGGAGACTGGAA
LOC_Os05g50370
Target Sequence 
AGAAGTCTTGAGTCACGGTAACCAGGAGGACCAGAAGGTGCCTGAAATGGATAAAACCAAAGGACGAAGTGATGCAAATG
CACAAGTTAAATTAAGTGGTGTAAACTTTTATGAAGATGGAGATGTTACAAGTGCTGCTAATAATGTTACAACTAGATTG
ACTACAAATTCAAAAGGCCAGGCGTCTTCCTCTTCAGAAATGCTAACTGGCAGACAGCACTTGCCTCAAGATGCTGGACC
TGCTATTTCTCAGACATCTAACGGAACTTTCCCTAGTCTTGAAAAGACCGAAGAAGTTTGCAAAGAAGCTGGGAGAGAAT
TACCAACAGATAAATCTGCTGCATTTGAAGATGAGAATAGCAGGGCATGCAAATCAAAGGCAGAGCTAAAGCAGCAACAA
TTTCATTCTGAGAAGAGTAGCAGTTTACCTAAATCTGCAGAAGGTCATATCCCATCTTCTGCTGATATATCAAGAAAAGA
AACACCTGGGGTTCAGAGACTCAAAGAGCAGGGAAGTCTAAGAACAGAAAGGGAAAGAGAGAAGGACAAAGAGGCTTCTC
GGAGACTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis