Browse Element(s) Details


Os.4166.1.S1_at

Description gb:D50317.1
DB_XREF= gi:2627057
TID=Os.4166.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.4166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for ADP glucose pyrophosphorylase large subunit, complete cds
DEF=Oryza sativa (japonica cultivar-group) mRNA for ADP glucose pyrophosphorylase large subunit, complete cds.
FL= gb:AK100910.1 gb:D50317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5038011/11Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein
LOC_Os05g50380Os.4166.1.S1_at11/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50380Os.53740.1.S1_s_at1/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein
LOC_Os05g50400OsAffx.15180.1.S1_at11/115+28800293..28801144hypothetical protein
LOC_Os05g50410Os.33045.1.S1_a_at11/115+28806350..28813611N terminus of Rad21/Rec8 like protein, expressed
LOC_Os05g50420OsAffx.27394.1.S1_at11/115+28814347..28815271expressed protein
LOC_Os05g50430NANA5+28817972..28820080hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019252biological_processstarch biosynthesis
GO:0010170cellular_componentglucose-1-phosphate adenylyltransferase complex
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4166.1.S1_at--760--6251Chr05:28789289..28789313 (25 bp)
GATGGGTGCGGATTTGTACGAAACT
LOC_Os05g50380
Os.4166.1.S1_at--573--1451Chr05:28789238..28789262 (25 bp)
AGAAGGCAAGGTCCCCATTGGTGTA
LOC_Os05g50380
Os.4166.1.S1_at--940--2531Chr05:28789090..28789114 (25 bp)
AACTGCATCATCGACATGAACGCGA
LOC_Os05g50380
Os.4166.1.S1_at--509--7451Chr05:28788937..28788961 (25 bp)
GTGTCCAAGAAAGTGATCGGCCTGA
LOC_Os05g50380
Os.4166.1.S1_at--14--8851Chr05:28788826..28788850 (25 bp)
TGATGCCACAGATCTCTGAACCCTG
LOC_Os05g50380
Os.4166.1.S1_at--821--9471Chr05:28788812..28788836 (25 bp)
TCTGAACCCTGAACCTGCAAATGCA
LOC_Os05g50380
Os.4166.1.S1_at--821--3011Chr05:28788793..28788817 (25 bp)
AATGCAGTGCAGTGCGTCTTTTCTT
LOC_Os05g50380
Os.4166.1.S1_at--1015--651Chr05:28788755..28788779 (25 bp)
ATGCAAGCTCGTTGATTCCACATGG
LOC_Os05g50380
Os.4166.1.S1_at--25--7011Chr05:28788676..28788700 (25 bp)
GTACTAGCAGTTCTTCGCTCGTTAA
LOC_Os05g50380
Os.4166.1.S1_at--553--9811Chr05:28788636..28788660 (25 bp)
TAACTAATAAGCTGCCCCGAGTGAA
LOC_Os05g50380
Os.4166.1.S1_at--798--1471Chr05:28788606..28788630 (25 bp)
AGCAGCAACTTTTTGGAGGGTCGTT
LOC_Os05g50380
Target Sequence 
GATGGGTGCGGATTTGTACGAAACTGAAGATGAAATTTCAAGACTACTGTCAGAAGGCAAGGTCCCCATTGGTGTAGGGG
AAAACACAAAGATAAACAACTGCATCATCGACATGAACGCGAGGGTTGGAAGGAACGTGGTCATCACAAACAGCGAGGGT
GTCCAAGAAAGTGATCGGCCTGAGGAAGGGTACTACATAAGGTCGGGAATCGTGGTGATCCTGAAGAACGCGACCATCAA
GGACGGGAAGGTCATATAGGAGAGCTCGCTGATGCCACAGATCTCTGAACCCTGAACCTGCAAATGCAGTGCAGTGCGTC
TTTTCTTGAGGGGTTAGGACATGCAAGCTCGTTGATTCCACATGGCAGAGAACTCGAGGGAAGATCCCAGGAAGACGGAT
GATCGAGAAAGATTGTGTAGTACTAGCAGTTCTTCGCTCGTTAAAATGTGTGTACTAAATAACTAATAAGCTGCCCCGAG
TGAAGTAGCAGCAGCAACTTTTTGGAGGGTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis