Browse Element(s) Details


Os.33045.1.S1_a_at

Description gb:AY371049.1
DB_XREF= gi:34558722
TID=Os.33045.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33045 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Rad21-4 protein mRNA, complete cds.
PROD=Rad21-4 protein
FL= gb:AY371049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5041011/11N terminus of Rad21/Rec8 like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein
LOC_Os05g50380Os.4166.1.S1_at11/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50380Os.53740.1.S1_s_at1/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein
LOC_Os05g50400OsAffx.15180.1.S1_at11/115+28800293..28801144hypothetical protein
LOC_Os05g50410Os.33045.1.S1_a_at11/115+28806350..28813611N terminus of Rad21/Rec8 like protein, expressed
LOC_Os05g50420OsAffx.27394.1.S1_at11/115+28814347..28815271expressed protein
LOC_Os05g50430NANA5+28817972..28820080hypothetical protein
LOC_Os05g50434Os.30600.1.S2_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.51503.1.S1_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.30600.1.S1_at9/115+28821418..28828923expressed protein
LOC_Os05g50440NANA5+28829227..28835788expressed protein
LOC_Os05g50450OsAffx.4676.1.S1_s_at11/115+28836696..28838054hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007062biological_processsister chromatid cohesion
GO:0007067biological_processmitosis
GO:0010032biological_processmeiotic chromosome condensation
GO:0000798cellular_componentnuclear cohesin complex
GO:0005634cellular_componentnucleus
GO:0008278cellular_componentcohesin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33045.1.S1_a_at--19--8311Chr05:28812187..28812211 (25 bp)
GGCTTTCAGATGTTGGGCCAACTCC
LOC_Os05g50410
Os.33045.1.S1_a_at--992--4391Chr05:28812203..28812326 (25 bp)
GCCAACTCCAGACCTGCTGGAAGAA
LOC_Os05g50410
Os.33045.1.S1_a_at--964--5411Chr05:28812330..28812354 (25 bp)
GAACCTACTCAAACCCCATATGAAA
LOC_Os05g50410
Os.33045.1.S1_a_at--381--1031Chr05:28812376..28812400 (25 bp)
AGGTCACACAATCAATCCACTCGTA
LOC_Os05g50410
Os.33045.1.S1_a_at--116--9311Chr05:28812481..28812503 (23 bp)
TCGTACCTCAAGCTACACTTTGACA
LOC_Os05g50410
Os.33045.1.S1_a_at--998--7551Chr05:28812510..28812534 (25 bp)
GGGCCTCACAGTCTGAATCATTAAG
LOC_Os05g50410
Os.33045.1.S1_a_at--472--3591Chr05:28812528..28812552 (25 bp)
CATTAAGTCAGCTAGCACATGGGAT
LOC_Os05g50410
Os.33045.1.S1_a_at--238--5711Chr05:28812573..28812593 (21 bp)
GACTCTTCTATCAAGCATGCGTTTT
LOC_Os05g50410
Os.33045.1.S1_a_at--507--8511Chr05:28813345..28813369 (25 bp)
TGGAACCATACGGAGACATCTTGAT
LOC_Os05g50410
Os.33045.1.S1_a_at--634--3131Chr05:28813417..28813441 (25 bp)
AATTTTCTGCTGTTGTGGTTCTTGC
LOC_Os05g50410
Os.33045.1.S1_a_at--821--6731Chr05:28813434..28813458 (25 bp)
GTTCTTGCACATCTCGTGTTATGTA
LOC_Os05g50410
Target Sequence 
GGCTTTCAGATGTTGGGCCAACTCCAGACCTGCTGGAAGAAATCGAACCTACTCAAACCCCATATGAAAAGAAATCCAAT
CCTATCGACCAGGTCACACAATCAATCCACTCGTACCTCAAGCTACACTTTGACACCCCAGGGGCCTCACAGTCTGAATC
ATTAAGTCAGCTAGCACATGGGATGACTACAGCAAAGGCTGCCCGACTCTTCTATCAAGCATGCGTTTTAGCAACTCATG
ATTTTATCAAGGTTAACCAGCTGGAACCATACGGAGACATCTTGATCTCGAGGGGACCAAAGATGTGACATCCTAAATGT
TTAATAGTTGGACAATTTTCTGCTGTTGTGGTTCTTGCACATCTCGTGTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33045.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis