Browse Element(s) Details


OsAffx.15180.1.S1_at

Description tigr:9633.m04743
TID=OsAffx.15180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5040011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein
LOC_Os05g50380Os.4166.1.S1_at11/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50380Os.53740.1.S1_s_at1/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein
LOC_Os05g50400OsAffx.15180.1.S1_at11/115+28800293..28801144hypothetical protein
LOC_Os05g50410Os.33045.1.S1_a_at11/115+28806350..28813611N terminus of Rad21/Rec8 like protein, expressed
LOC_Os05g50420OsAffx.27394.1.S1_at11/115+28814347..28815271expressed protein
LOC_Os05g50430NANA5+28817972..28820080hypothetical protein
LOC_Os05g50434Os.30600.1.S2_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.51503.1.S1_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.30600.1.S1_at9/115+28821418..28828923expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15180.1.S1_at--269--471Chr05:28800493..28800517 (25 bp)
ATCTCCATGGGCGTATTCGCAGATG
LOC_Os05g50400
OsAffx.15180.1.S1_at--21--8391Chr05:28800467..28800491 (25 bp)
GGCGATGTGGATGCTGCACGCTCTC
LOC_Os05g50400
OsAffx.15180.1.S1_at--119--6271Chr05:28800464..28800488 (25 bp)
GATGTGGATGCTGCACGCTCTCCTC
LOC_Os05g50400
OsAffx.15180.1.S1_at--486--5271Chr05:28800427..28800451 (25 bp)
GAAGGCAAGGCCCTCGAGGAAAACA
LOC_Os05g50400
OsAffx.15180.1.S1_at--313--3791Chr05:28800415..28800439 (25 bp)
CTCGAGGAAAACATCAGCGTGACAC
LOC_Os05g50400
OsAffx.15180.1.S1_at--953--391Chr05:28800403..28800427 (25 bp)
ATCAGCGTGACACTGCCACCAAACA
LOC_Os05g50400
OsAffx.15180.1.S1_at--237--1712Chr05:28800386..28800410 (25 bp)
ACCAAACATTTTGCTTTCTGCCAAC
LOC_Os05g50400
OsAffx.15180.1.S1_at--1080--2392Chr05:28800383..28800407 (25 bp)
AAACATTTTGCTTTCTGCCAACCTC
LOC_Os05g50400
OsAffx.15180.1.S1_at--292--171Chr05:28800379..28800403 (25 bp)
ATTTTGCTTTCTGCCAACCTCGACA
LOC_Os05g50400
OsAffx.15180.1.S1_at--416--2631Chr05:28800364..28800388 (25 bp)
AACCTCGACATCATGCGCTTCGGCA
LOC_Os05g50400
OsAffx.15180.1.S1_at--526--2091Chr05:28800357..28800381 (25 bp)
ACATCATGCGCTTCGGCATGTACCG
LOC_Os05g50400
Target Sequence 
ATCTCCATGGGCGTATTCGCAGATGGGGCGATGTGGATGCTGCACGCTCTCCTCCAGCAGGCAGTGGAAGGCAAGGCCCT
CGAGGAAAACATCAGCGTGACACTGCCACCAAACATTTTGCTTTCTGCCAACCTCGACATCATGCGCTTCGGCATGTACC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis