Browse Element(s) Details


Os.56966.1.S1_at

Description gb:AK110644.1
DB_XREF= gi:32995853
TID=Os.56966.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-D03, full insert sequence.
FL= gb:AK110644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5039011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein
LOC_Os05g50380Os.4166.1.S1_at11/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50380Os.53740.1.S1_s_at1/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein
LOC_Os05g50400OsAffx.15180.1.S1_at11/115+28800293..28801144hypothetical protein
LOC_Os05g50410Os.33045.1.S1_a_at11/115+28806350..28813611N terminus of Rad21/Rec8 like protein, expressed
LOC_Os05g50420OsAffx.27394.1.S1_at11/115+28814347..28815271expressed protein
LOC_Os05g50430NANA5+28817972..28820080hypothetical protein
LOC_Os05g50434Os.30600.1.S2_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.51503.1.S1_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.30600.1.S1_at9/115+28821418..28828923expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56966.1.S1_at--53--5793Chr11:20766129..20766153 (25 bp)
GACGACCTCAAGTTGGCTGTGGCGC
NONE
Os.56966.1.S1_at--269--7491Chr05:28797527..28797551 (25 bp)
GTGGGTCCCACCGAGACCTGAGGAA
LOC_Os05g50390
Os.56966.1.S1_at--252--3852Chr05:28797510..28797534 (25 bp)
CTGAGGAACTCGTAGCCAAACTTGG
LOC_Os05g50390
Os.56966.1.S1_at--228--5271Chr05:28797414..28797438 (25 bp)
GAATGCCACGTAAGCCCACGGCGAA
LOC_Os05g50390
Os.56966.1.S1_at--67--871Chr05:28797368..28797392 (25 bp)
ATGGCTGATGGCTCATTAGTTCTAG
LOC_Os05g50390
Os.56966.1.S1_at--1162--6931Chr05:28797344..28797368 (25 bp)
GTAGTACTTGCTACTTGGACGGAGC
LOC_Os05g50390
Os.56966.1.S1_at--553--5751Chr05:28797327..28797351 (25 bp)
GACGGAGCATTTATCTAGCTCTCGT
LOC_Os05g50390
Os.56966.1.S1_at--63--10011Chr05:28797312..28797336 (25 bp)
TAGCTCTCGTTTCTGACAGCTTGTA
LOC_Os05g50390
Os.56966.1.S1_at--343--5651Chr05:28797298..28797322 (25 bp)
GACAGCTTGTATGGCAACACACTCC
LOC_Os05g50390
Os.56966.1.S1_at--547--2471Chr05:28797283..28797307 (25 bp)
AACACACTCCTCATGCCGGAAAAAG
LOC_Os05g50390
Os.56966.1.S1_at--888--891Chr05:28797246..28797270 (25 bp)
AGGCGCATTGCCTGACAGATTCTGT
LOC_Os05g50390
Target Sequence 
GACGACCTCAAGTTGGCTGTGGCGCTTTGACCTGCCGGGACGGCGACGACGGTGGCGCCAACCTCCTCTTCTCCTCCCCC
GCTATCGCCTCCTCCTCCAGCCCGTCGGCTGCCTCGCCCCTCTCCCCTCTCTCCTCTAGCACGAGTGTGGGTCCCACCGA
GACCTGAGGAACTCGTAGCCAAACTTGGCTACTCGGACCTGAGCAAGCTGCACGGTTTGACGATGTGGCAGGGAATATTC
GGTTTTTGGTGTGGAGGCTGAATGCCACGTAAGCCCACGGCGAATGGCCTAACGGCGTGGCTGCCATGGCTGATGGCTCA
TTAGTTCTAGTAGTACTTGCTACTTGGACGGAGCATTTATCTAGCTCTCGTTTCTGACAGCTTGTATGGCAACACACTCC
TCATGCCGGAAAAAGAGAAGAGAAGAGAGGCGCATTGCCTGACAGATTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis