Browse Element(s) Details


Os.30600.1.S2_at

Description gb:AK120030.1
DB_XREF= gi:37989653
TID=Os.30600.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-D07, full insert sequence.
FL= gb:AK120030.1 gb:AK108609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5043411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein
LOC_Os05g50400OsAffx.15180.1.S1_at11/115+28800293..28801144hypothetical protein
LOC_Os05g50410Os.33045.1.S1_a_at11/115+28806350..28813611N terminus of Rad21/Rec8 like protein, expressed
LOC_Os05g50420OsAffx.27394.1.S1_at11/115+28814347..28815271expressed protein
LOC_Os05g50430NANA5+28817972..28820080hypothetical protein
LOC_Os05g50434Os.30600.1.S2_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.51503.1.S1_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.30600.1.S1_at9/115+28821418..28828923expressed protein
LOC_Os05g50440NANA5+28829227..28835788expressed protein
LOC_Os05g50450OsAffx.4676.1.S1_s_at11/115+28836696..28838054hypothetical protein
LOC_Os05g50460OsAffx.15181.1.S1_at11/115+28840853..28842757pentatricopeptide, putative
LOC_Os05g50470Os.55486.1.S1_at11/115+28850020..28851335expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30600.1.S2_at--364--1191Chr05:28821947..28821971 (25 bp)
AGTACCTCAAGGTCAGGACAGCGGT
LOC_Os05g50434
Os.30600.1.S2_at--286--2031Chr05:28821899..28821923 (25 bp)
ACTACCACCACCAGTTTCATGGAAG
LOC_Os05g50434
Os.30600.1.S2_at--21--6172Chr12:19618508..19618532 (25 bp)
GAGGTTCTACTCTTTAATCCAGTAA
NONE
Os.30600.1.S2_at--853--1491Chr05:28821788..28821812 (25 bp)
AGCACAACAGAGTAGCACTTCCAGG
LOC_Os05g50434
Os.30600.1.S2_at--253--4432Chr12:19618371..19618394 (24 bp)
GCCTTTAAAAATGCATGTCCTACTT
NONE
Os.30600.1.S2_at--91--6771Chr05:28821577..28821601 (25 bp)
GTTAAGCGTTACTCACCAGATCACT
LOC_Os05g50434
Os.30600.1.S2_at--652--6452Chr12:26303348..26303372 (25 bp)
GATCACTACGTTCAAGGACTCTCCA
NONE
Os.30600.1.S2_at--684--5891Chr05:28821534..28821558 (25 bp)
GAGCTGTCTCCAGATGTCAACGTTC
LOC_Os05g50434
Os.30600.1.S2_at--577--7071Chr05:28821519..28821543 (25 bp)
GTCAACGTTCTTCTCAAAGGGTGTA
LOC_Os05g50434
Os.30600.1.S2_at--447--1551Chr05:28821488..28821512 (25 bp)
AGCTTGTCATTTTCTTCCAGTTTGC
LOC_Os05g50434
Os.30600.1.S2_at--1148--7951Chr05:28821457..28821481 (25 bp)
GGATCACTCTCACAAGGTGTCTATA
LOC_Os05g50434
Target Sequence 
AGTACCTCAAGGTCAGGACAGCGGTAGAATAAGGGATCTCGAGCATTGACTACCACCACCAGTTTCATGGAAGAAAAGAG
AATAAAAGTAAGTATATTAGGAACTAAAAATAATCCAAAGAGGTTCTACTCTTTAATCCAGTAAAAGCAAATATGATTGA
GCACAACAGAGTAGCACTTCCAGGGGAAAAAATGCAATAATACTACGGAACATTGAAAGCAAAGTCATTATGTGAGCCAA
AATTTGCAAAGCATTGCCTTTAAAAATGCATGTCCTACTTATTTTTTTTTTTTTTTTTTTTTTTGGAGAAATGCTTGGTT
TTAGTATCATAAGTACTGGCAAGCAATCAACCACAAGAGCGATGGATGAAACTGATAGTGAAGGTTAAGCGTTACTCACC
AGATCACTACGTTCAAGGACTCTCCAGAGCTGTCTCCAGATGTCAACGTTCTTCTCAAAGGGTGTAAGCACAAGCTTGTC
ATTTTCTTCCAGTTTGCAGAAATGGATCACTCTCACAAGGTGTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30600.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis