Browse Element(s) Details


Os.55486.1.S1_at

Description gb:AK108181.1
DB_XREF= gi:32993390
TID=Os.55486.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A12, full insert sequence.
FL= gb:AK108181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5047011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50434Os.30600.1.S2_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.51503.1.S1_at11/115+28821418..28828923expressed protein
LOC_Os05g50434Os.30600.1.S1_at9/115+28821418..28828923expressed protein
LOC_Os05g50440NANA5+28829227..28835788expressed protein
LOC_Os05g50450OsAffx.4676.1.S1_s_at11/115+28836696..28838054hypothetical protein
LOC_Os05g50460OsAffx.15181.1.S1_at11/115+28840853..28842757pentatricopeptide, putative
LOC_Os05g50470Os.55486.1.S1_at11/115+28850020..28851335expressed protein
LOC_Os05g50480Os.8172.1.S1_at11/115+28857095..28865111expressed protein
LOC_Os05g50490Os.5652.1.S1_at11/115+28867581..28869482glucan endo-1,3-beta-glucosidase, putative, expressed
LOC_Os05g50500OsAffx.4677.1.S1_s_at11/115+28874263..28875380expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55486.1.S1_at--592--2711Chr05:28850902..28850926 (25 bp)
AAGCAAACGAGGTTCCACCGCGAGG
LOC_Os05g50470
Os.55486.1.S1_at--760--8031Chr05:28850925..28850949 (25 bp)
GGAGTCGATGACCATGACCATGTCC
LOC_Os05g50470
Os.55486.1.S1_at--967--3951Chr05:28850994..28851018 (25 bp)
CGGAGCACTCGCAGTCGTGGAATAA
LOC_Os05g50470
Os.55486.1.S1_at--1002--5234Chr11:300820..301135 (25 bp)
GAATAAGTTGGCCTCACATGTCAGT
NONE
Os.55486.1.S1_at--749--5191Chr05:28851083..28851107 (25 bp)
GAATTGAAGCTCTCCTTGGCTACAT
LOC_Os05g50470
Os.55486.1.S1_at--919--10851Chr05:28851098..28851122 (25 bp)
TTGGCTACATCTTGTGTGCACGTTT
LOC_Os05g50470
Os.55486.1.S1_at--541--1871Chr05:28851117..28851141 (25 bp)
ACGTTTTGCCTTGCCTTGTTCTTGT
LOC_Os05g50470
Os.55486.1.S1_at--419--6431Chr05:28851177..28851201 (25 bp)
GATCATCGAGGTTTTACAGCCGTTG
LOC_Os05g50470
Os.55486.1.S1_at--584--2151Chr05:28851192..28851216 (25 bp)
ACAGCCGTTGGATGGTGGATCCGAC
LOC_Os05g50470
Os.55486.1.S1_at--831--551Chr05:28851210..28851234 (25 bp)
ATCCGACGGTGGTAACAGCGTTGGA
LOC_Os05g50470
Os.55486.1.S1_at--187--4751Chr05:28851296..28851320 (25 bp)
GCTGTTGGTTGCGAGATGGTTCTAC
LOC_Os05g50470
Target Sequence 
AAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGC
GCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAGAAAAAAAATCCCTGT
GAAAAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGCCTTGCCTTGTTCTTGTT
CCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGAGGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGT
AACAGCGTTGGATGAAAATCTGAGGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTG
GTTGCGAGATGGTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis