Browse Element(s) Details


Os.8172.1.S1_at

Description gb:AK100204.1
DB_XREF= gi:32985413
TID=Os.8172.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041E07, full insert sequence.
FL= gb:AK102861.1 gb:AK106199.1 gb:AK100204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5048011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50440NANA5+28829227..28835788expressed protein
LOC_Os05g50450OsAffx.4676.1.S1_s_at11/115+28836696..28838054hypothetical protein
LOC_Os05g50460OsAffx.15181.1.S1_at11/115+28840853..28842757pentatricopeptide, putative
LOC_Os05g50470Os.55486.1.S1_at11/115+28850020..28851335expressed protein
LOC_Os05g50480Os.8172.1.S1_at11/115+28857095..28865111expressed protein
LOC_Os05g50490Os.5652.1.S1_at11/115+28867581..28869482glucan endo-1,3-beta-glucosidase, putative, expressed
LOC_Os05g50500OsAffx.4677.1.S1_s_at11/115+28874263..28875380expressed protein
LOC_Os05g50510Os.50276.1.S1_at11/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_at3/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_x_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510OsAffx.17241.1.S1_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50520NANA5+28888150..28892854retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8172.1.S1_at--380--2231Chr05:28864528..28864552 (25 bp)
ACAATGCCACCTCTTGCAGCAAATG
LOC_Os05g50480
Os.8172.1.S1_at--648--7372Chr11:26971662..26971716 (25 bp)
GTGACGGCAACTTAAGCTCTGCTGC
NONE
Os.8172.1.S1_at--734--3091Chr05:28864732..28864756 (25 bp)
AATAGTTACTGACCCAGCCTTTGAA
LOC_Os05g50480
Os.8172.1.S1_at--111--9271Chr05:28864775..28864799 (25 bp)
TCCTGTTGTGGTGCGTGCTACGTCA
LOC_Os05g50480
Os.8172.1.S1_at--324--9091Chr05:28864790..28864814 (25 bp)
TGCTACGTCAGAGATGCCATGCAAT
LOC_Os05g50480
Os.8172.1.S1_at--810--891Chr05:28864831..28864855 (25 bp)
AGGCGCCTGAATAGCAACTGTGTAT
LOC_Os05g50480
Os.8172.1.S1_at--602--411Chr05:28864908..28864932 (25 bp)
ATCATGTTCTACTACCCTTAGCATT
LOC_Os05g50480
Os.8172.1.S1_at--683--4311Chr05:28864923..28864947 (25 bp)
CCTTAGCATTTTCTAGGATGGCCTA
LOC_Os05g50480
Os.8172.1.S1_at--414--8011Chr05:28864938..28864962 (25 bp)
GGATGGCCTAAAACTGTAGCTCTAT
LOC_Os05g50480
Os.8172.1.S1_at--562--5551Chr05:28864980..28865004 (25 bp)
GAAAGGACCGTTCTTTCTCAGTTTG
LOC_Os05g50480
Os.8172.1.S1_at--436--9511Chr05:28864995..28865019 (25 bp)
TCTCAGTTTGTTTTGTTCTTCCGTT
LOC_Os05g50480
Target Sequence 
ACAATGCCACCTCTTGCAGCAAATGCCTTGTATTATCAAGGGCAGCAGGGTCACCAGGGNCGGCCTTCGGCAGGGGCAGC
TGCCTTCACAGTTTGGTGCTCCACTTGCACCGACACAGCCCGGCCTGGGCCATGAGCACCGGAACCCTAGTGACGGCAAC
TTAAGCTCTGCTGCCGCTGCCGCTNNNNNNCAGGCTAACCAAATGTGGCCAAATAGTTACTGACCCAGCCTTTGAAACNC
TTTTGAGTGTGTGGTCCTGTTGTGGTGCGTGCTACGTCAGAGATGCCATGCAATGCTTTTGGCCTGATTCAGGCGCCTGA
ATAGCAACTGTGTATATGAGTTGCTATGTCGACATTTTGGAGAGGCAGAGGAGATGTATGTTTGATCATCATGTTCTACT
ACCCTTAGCATTTTCTAGGATGGCCTAAAACTGTAGCTCTATTTATTTATATTCTGATAGAAAGGACCGTTCTTTCTCAG
TTTGTTTTGTTCTTCCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis