Browse Element(s) Details


Os.5652.1.S1_at

Description gb:AK109090.1
DB_XREF= gi:32994299
TID=Os.5652.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A02, full insert sequence.
FL= gb:AK109090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5049011/11glucan endo-1,3-beta-glucosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50460OsAffx.15181.1.S1_at11/115+28840853..28842757pentatricopeptide, putative
LOC_Os05g50470Os.55486.1.S1_at11/115+28850020..28851335expressed protein
LOC_Os05g50480Os.8172.1.S1_at11/115+28857095..28865111expressed protein
LOC_Os05g50490Os.5652.1.S1_at11/115+28867581..28869482glucan endo-1,3-beta-glucosidase, putative, expressed
LOC_Os05g50500OsAffx.4677.1.S1_s_at11/115+28874263..28875380expressed protein
LOC_Os05g50510Os.50276.1.S1_at11/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_at3/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_x_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510OsAffx.17241.1.S1_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50520NANA5+28888150..28892854retrotransposon protein, putative, unclassified
LOC_Os05g50530OsAffx.19258.2.S1_x_at10/115+28893468..28896400hypothetical protein
LOC_Os05g50530OsAffx.24518.2.S1_x_at2/115+28893468..28896400hypothetical protein
LOC_Os05g50530Os.57200.1.S1_x_at1/115+28893468..28896400hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5652.1.S1_at--225--131Chr05:28868234..28868258 (25 bp)
ATTCACCTCTCGTTGCAATTCTGCA
LOC_Os05g50490
Os.5652.1.S1_at--801--491Chr05:28868202..28868225 (24 bp)
ATCGTGCAAGTACCCATCGACGAGC
LOC_Os05g50490
Os.5652.1.S1_at--655--5791Chr05:28868029..28868053 (25 bp)
GACGAACCCAGCTTTCGGTGGCTAC
LOC_Os05g50490
Os.5652.1.S1_at--395--2931Chr05:28867896..28867920 (25 bp)
AAGGAAACACTCCTGTCGCTGGCGT
LOC_Os05g50490
Os.5652.1.S1_at--727--5131Chr05:28867863..28867887 (25 bp)
GCAACGGTTTCTCTGAACCTGTACA
LOC_Os05g50490
Os.5652.1.S1_at--860--4371Chr05:28867829..28867853 (25 bp)
CCAAGCTGCTGTTTCACGATTCAAA
LOC_Os05g50490
Os.5652.1.S1_at--102--491Chr05:28867805..28867829 (25 bp)
ATCTGTAGAAACTGCACGGCTTTGG
LOC_Os05g50490
Os.5652.1.S1_at--454--7511Chr05:28867781..28867805 (25 bp)
GTGGATGTTTTGGTACTCGCACAGT
LOC_Os05g50490
Os.5652.1.S1_at--828--5111Chr05:28867763..28867787 (25 bp)
GCACAGTTGCCCTGATGCAAGCAGA
LOC_Os05g50490
Os.5652.1.S1_at--89--10051Chr05:28867664..28867688 (25 bp)
TAGATCGACTTCTCCTAGCTGTAGA
LOC_Os05g50490
Os.5652.1.S1_at--917--5891Chr05:28867585..28867609 (25 bp)
GAGCTGAACTTTTGCGTTCACCTAC
LOC_Os05g50490
Target Sequence 
ATTCACCTCTCGTTGCAATTCTGCAGGCTCCTCATCGTGCAAGTACCCATCGACGAGCACCGGTGCTTCGGTTCTGAACA
CGTCGACGCCGACGAACCCAGCTTTCGGTGGCTACGACAACTCTCCTCCTGGATTCGGCAACAACTCCCCTCCGCTGTAC
GGGTCCATGTCGCCTCCGGGTTACAACGACAACATCGGCGCCGCCGCGGCCATGGCCGGCAGCAAGGAAACACTCCTGTC
GCTGGCGTGCGTCGTCGCAACGGTTTCTCTGAACCTGTACAAGTGAGAATCCAAGCTGCTGTTTCACGATTCAAATCTGT
AGAAACTGCACGGCTTTGGTGGATGTTTTGGTACTCGCACAGTTGCCCTGATGCAAGCAGAAAGCAGAGAAATGAATGTG
CAGAATATGTTTTGGTCAGATGAGCTAGGAGAAGCAGGCCGGCAAGATTGATAGATAGATCGACTTCTCCTAGCTGTAGA
AATAGTAGCATGTGGTGCTGTATGTAGTTACTAGTAGTAATCAGTAAGAACATTGAGCTGAACTTTTGCGTTCACCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis