Browse Element(s) Details


Os.2307.1.S1_at

Description gb:AK064624.1
DB_XREF= gi:32974642
TID=Os.2307.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E07, full insert sequence.
FL= gb:AK064624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5036010/11Anaphase promoting complex subunit 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50300Os.54669.1.S1_at11/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50300OsAffx.4322.1.S1_x_at2/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50310Os.57347.1.S1_at11/115+28752502..28753597ZF-HD protein dimerisation region containing protein, expressed
LOC_Os05g50320OsAffx.27393.1.S1_at11/115+28754132..28754375hypothetical protein
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein
LOC_Os05g50380Os.4166.1.S1_at11/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50380Os.53740.1.S1_s_at1/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2307.1.S1_at--1150--10151Chr05:28772606..28772630 (25 bp)
TATCATTATCTGGAGCTGATCCCCG
LOC_Os05g50360
Os.2307.1.S1_at--494--611Chr05:28773301..28773325 (25 bp)
ATGCTCCAAATTTCGGTGTTGTCCA
LOC_Os05g50360
Os.2307.1.S1_at--38--10111NONE
TATGGGCCAAGACCGAATCATGTTC
NONE
Os.2307.1.S1_at--531--1691Chr05:28774136..28774160 (25 bp)
AGCCATTTCACTTCACTTCAAGGGA
LOC_Os05g50360
Os.2307.1.S1_at--336--5211Chr05:28774159..28774183 (25 bp)
GAATTCGTCACCTACTCTACTGTTA
LOC_Os05g50360
Os.2307.1.S1_at--478--5351Chr05:28774238..28774262 (25 bp)
GAAGATTTTGGATAGCTCAGCACAC
LOC_Os05g50360
Os.2307.1.S1_at--1037--2131Chr05:28774269..28774293 (25 bp)
ACAGATTGTGTGGTCGATCCCATTC
LOC_Os05g50360
Os.2307.1.S1_at--1116--6371Chr05:28774284..28774308 (25 bp)
GATCCCATTCTCTGTGCTTCAGAAT
LOC_Os05g50360
Os.2307.1.S1_at--276--1151Chr05:28774311..28774335 (25 bp)
AGTCTCGCATGATGTGCACCCAGAA
LOC_Os05g50360
Os.2307.1.S1_at--623--7931Chr05:28774426..28774450 (25 bp)
GGATTCATCTGTGTGTACGAGCTAC
LOC_Os05g50360
Os.2307.1.S1_at--551--1871Chr05:28774442..28774466 (25 bp)
ACGAGCTACATTTTCGTCCATGGAG
LOC_Os05g50360
Target Sequence 
TATCATTATCTGGAGCTGATCCCCGAGAAACATTCATTCATACATTTATGCTCCAAATTTCGGTGTTGTCCAATCACTTG
AATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACCGAATCATGTTCCCCATCAGCCATTTCACTT
CACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGA
GCTTTTGTTGAAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGTGCTTCAGAAT
TCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTGAAGCATCAAGTCTCTCATTGCCTTTCCGGA
GNAATTGCTGTATTTTTAATATGNTAGAAAANTTGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGGA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis