Browse Element(s) Details


OsAffx.15178.1.S1_s_at

Description tigr:9633.m04737
TID=OsAffx.15178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5034011/11RADIALIS, putative, expressed
LOC_Os05g049141/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed
LOC_Os05g50290OsAffx.27392.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50290Os.2301.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50300Os.54669.1.S1_at11/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50300OsAffx.4322.1.S1_x_at2/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50310Os.57347.1.S1_at11/115+28752502..28753597ZF-HD protein dimerisation region containing protein, expressed
LOC_Os05g50320OsAffx.27393.1.S1_at11/115+28754132..28754375hypothetical protein
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15178.1.S1_s_at--623--5671Chr05:28762583..28762607 (25 bp)
GACATCAAGCACATCGAGTCCGGCA
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--177--3051Chr05:28762125..28762149 (25 bp)
AATCGCGCGCGGATAGCATGATGAT
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--750--51Chr05:28762090..28762114 (25 bp)
ATTGACGATGCGTGGTGTGGTTCAC
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--145--7891Chr05:28762072..28762096 (25 bp)
GGTTCACGTAGACGCAAGGATGCAT
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--816--3571Chr05:28762050..28762074 (25 bp)
CATATGGCGATATCTGCAGATGCAT
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--423--8071Chr05:28762002..28762026 (25 bp)
GGAGCAGTTTAATTATCACGCGGTC
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--1113--151Chr05:28761991..28762015 (25 bp)
ATTATCACGCGGTCGATATCGATCG
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--1033--511Chr05:28761966..28761990 (25 bp)
ATCGATCTCTCAACCATGTGCATGT
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--480--7331Chr05:28761949..28761973 (25 bp)
GTGCATGTCTAGCTATCACTCTTAC
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--187--3691Chr05:28761937..28761961 (25 bp)
CTATCACTCTTACCTTATTTCTACG
LOC_Os05g50340
OsAffx.15178.1.S1_s_at--377--6892Chr05:28761893..28761917 (25 bp)
GTATATCTATCTATCTGAACCATGT
LOC_Os05g50340
Target Sequence 
GACATCAAGCACATCGAGTCCGGCAAGGTCCCCTTCCCCGCCTACCGCTGCCCCGCCGCCGCCGGCTACCAGGCCGAAAG
GTTGAAGCATTTGAAGATCTAGGTGTGTGGATGTATTGATTGAAGAATCGCGCGCGGATAGCATGATGATGTGTACGACT
ATTGACGATGCGTGGTGTGGTTCACGTAGACGCAAGGATGCATATGGCGATATCTGCAGATGCATATGCATGTTAATAAC
TAGGAGAAGGAGCAGTTTAATTATCACGCGGTCGATATCGATCGATCGATCTCTCAACCATGTGCATGTCTAGCTATCAC
TCTTACCTTATTTCTACGTGTATAGCATGAGTACAAAGTATATCTATCTATCTGAACCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15178.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis