Browse Element(s) Details


OsAffx.27392.1.S1_at

Description tigr:9633.m04732
TID=OsAffx.27392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HhH-GPD superfamily base excision DNA repair protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5029011/11HhH-GPD superfamily base excision DNA repair protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50260OsAffx.15177.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260Os.8509.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_x_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50270Os.53593.1.S1_at11/115+28734333..28735599GATA zinc finger family protein, expressed
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed
LOC_Os05g50290OsAffx.27392.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50290Os.2301.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50300Os.54669.1.S1_at11/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50300OsAffx.4322.1.S1_x_at2/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50310Os.57347.1.S1_at11/115+28752502..28753597ZF-HD protein dimerisation region containing protein, expressed
LOC_Os05g50320OsAffx.27393.1.S1_at11/115+28754132..28754375hypothetical protein
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27392.1.S1_at--1009--9331Chr05:28743907..28743931 (25 bp)
TCGCCCGCAAGTATGCCTCCGGGAT
LOC_Os05g50290
OsAffx.27392.1.S1_at--1101--5171Chr05:28743913..28743937 (25 bp)
GCAAGTATGCCTCCGGGATCCTCTC
LOC_Os05g50290
OsAffx.27392.1.S1_at--438--4431Chr05:28743978..28744002 (25 bp)
GCCATGCTCACCATGGTCAAGGGCA
LOC_Os05g50290
OsAffx.27392.1.S1_at--627--8291Chr05:28743999..28744023 (25 bp)
GGCATTGGCGCATGGAGCGTCCACA
LOC_Os05g50290
OsAffx.27392.1.S1_at--807--4111Chr05:28744007..28744031 (25 bp)
CGCATGGAGCGTCCACATGTTCATG
LOC_Os05g50290
OsAffx.27392.1.S1_at--953--6732Chr05:28744025..28744049 (25 bp)
GTTCATGATCTTCTCCCTCAATCGC
LOC_Os05g50290
OsAffx.27392.1.S1_at--181--9051Chr05:28744093..28744117 (25 bp)
TGCAGCATCTCTACGGTCTCGACGC
LOC_Os05g50290
OsAffx.27392.1.S1_at--409--4251Chr05:28744128..28744152 (25 bp)
CCGTCGCAGATGGAGAAGCTATGCG
LOC_Os05g50290
OsAffx.27392.1.S1_at--1067--2691Chr05:28744143..28744167 (25 bp)
AAGCTATGCGAGCAATGGCGCCCTT
LOC_Os05g50290
OsAffx.27392.1.S1_at--1037--2951Chr05:28744156..28744180 (25 bp)
AATGGCGCCCTTACCGCTCTGTTGG
LOC_Os05g50290
OsAffx.27392.1.S1_at--12--2151Chr05:28744307..28744331 (25 bp)
ACAGCAGCAACAGAGTGTCATCCAA
LOC_Os05g50290
Target Sequence 
TCGCCCGCAAGTATGCCTCCGGGATCCTCTCCGACGCCGCCGTCGTCAACATGGACGACCGCTCCCTCGCCGCCATGCTC
ACCATGGTCAAGGGCATTGGCGCATGGAGCGTCCACATGTTCATGATCTTCTCCCTCAATCGCCCCGACGTGCTCCCCGC
CGCCGACCTTGGGGTGCGCAAGGGCGTGCAGCATCTCTACGGTCTCGACGCCGTGCCCCGGCCGTCGCAGATGGAGAAGC
TATGCGAGCAATGGCGCCCTTACCGCTCTGTTGGGGCATGGTACATGTGGCGGCTCATCGAATCCAAGGCGCCGCCGCCG
CCGCCGGCCATCCCTGTCGGGCCGCCTGCACTGACTGAACATGGCGATGAGCTCATGCTCCAGCAGCAGCAGCATCAGCA
ACAGCAGCAACAGAGTGTCATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis