Browse Element(s) Details


Os.22907.1.S1_at

Description gb:AK107217.1
DB_XREF= gi:32992426
TID=Os.22907.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23379 putative protein kinase mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C11, full insert sequence.
FL= gb:AY224453.1 gb:AK107217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5019011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein
LOC_Os05g50220Os.10824.1.S1_at9/115+28696786..28699536Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g50230Os.55617.1.S1_at11/115+28703662..28704897expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22907.1.S1_at--1153--10251Chr05:28677483..28677507 (25 bp)
TTTGAGCTTCTCAGAGGTCACGTCT
LOC_Os05g50190
Os.22907.1.S1_at--835--10331Chr05:28677351..28677375 (25 bp)
TTTAAGGCCTGAGATGCCACGCTGC
LOC_Os05g50190
Os.22907.1.S1_at--315--611Chr05:28677286..28677310 (25 bp)
ATGCGAACCCTGACAAGCGACCTGA
LOC_Os05g50190
Os.22907.1.S1_at--54--7731Chr05:28677215..28677239 (25 bp)
GGTGGAGGCATGATCCCTGTAGATC
LOC_Os05g50190
Os.22907.1.S1_at--1037--10031Chr05:28677196..28677220 (25 bp)
TAGATCAGCGACAAGGATGCCTTTC
LOC_Os05g50190
Os.22907.1.S1_at--961--6351Chr05:28677181..28677205 (25 bp)
GATGCCTTTCATGCTTCAGGCAGTA
LOC_Os05g50190
Os.22907.1.S1_at--307--1511Chr05:28677136..28677160 (25 bp)
AGCACGCTGGAGTTGTATCTGCAGA
LOC_Os05g50190
Os.22907.1.S1_at--1070--6551Chr05:28677113..28677137 (25 bp)
GATTGACGGCTACATCTCGTGTAAT
LOC_Os05g50190
Os.22907.1.S1_at--400--1571Chr05:28677045..28677069 (25 bp)
AGCTAGCATGCTTAAGACCTTTGGT
LOC_Os05g50190
Os.22907.1.S1_at--931--1371Chr05:28677031..28677055 (25 bp)
AGACCTTTGGTTTGTGTAGCCCTCT
LOC_Os05g50190
Os.22907.1.S1_at--1024--6951Chr05:28677016..28677040 (25 bp)
GTAGCCCTCTGATGTAAATTCCCTG
LOC_Os05g50190
Target Sequence 
TTTGAGCTTCTCAGAGGTCACGTCTGCTGTTGTTCGTCAGAATTTAAGGCCTGAGATGCCACGCTGCTGTCCAAGTTCTC
TGGCAAACGTGATGAAACGCTGCTGGGATGCGAACCCTGACAAGCGACCTGAGATGGCCGAGGTGGTGTCTATGTTGGAG
GCGATCGATACTTCGAAGGGTGGAGGCATGATCCCTGTAGATCAGCGACAAGGATGCCTTTCATGCTTCAGGCAGTACAG
GGGTCCGTGACGGATGGAGCACGCTGGAGTTGTATCTGCAGATTGACGGCTACATCTCGTGTAATTCGATTACATTTGTT
TTAAGGTACGTAAGCAAACTGGTTATGGAGCTAGCATGCTTAAGACCTTTGGTTTGTGTAGCCCTCTGATGTAAATTCCC
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis