Browse Element(s) Details


Os.8889.1.S1_at

Description gb:AK119799.1
DB_XREF= gi:37989422
TID=Os.8889.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-H08, full insert sequence.
FL= gb:AK119799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5018011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein
LOC_Os05g50220Os.10824.1.S1_at9/115+28696786..28699536Peroxisomal membrane anchor protein conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0043269biological_processregulation of ion transport
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8889.1.S1_at--761--1391Chr05:28675058..28675082 (25 bp)
AGACGCACCTGGTGGACCAGGCGCA
LOC_Os05g50180
Os.8889.1.S1_at--888--1731Chr05:28674936..28674960 (25 bp)
ACCTTCGAGGAGCTCACGCGGATGA
LOC_Os05g50180
Os.8889.1.S1_at--971--1571Chr05:28674926..28674950 (25 bp)
AGCTCACGCGGATGATGCGCGACGC
LOC_Os05g50180
Os.8889.1.S1_at--576--10691Chr05:28674790..28674814 (25 bp)
TTGCCCGCGTCTCTAGCTTAGCTGT
LOC_Os05g50180
Os.8889.1.S1_at--974--1551Chr05:28674776..28674800 (25 bp)
AGCTTAGCTGTTGATTCTTCTTCCA
LOC_Os05g50180
Os.8889.1.S1_at--371--9571Chr05:28674761..28674785 (25 bp)
TCTTCTTCCATTTTTAGGACACAAC
LOC_Os05g50180
Os.8889.1.S1_at--600--8111Chr05:28674745..28674769 (25 bp)
GGACACAACGACTAAGTTTTTCTAG
LOC_Os05g50180
Os.8889.1.S1_at--975--6811Chr05:28674730..28674754 (25 bp)
GTTTTTCTAGCGTAGCTATGACCAT
LOC_Os05g50180
Os.8889.1.S1_at--114--4871Chr05:28674716..28674740 (25 bp)
GCTATGACCATGTGTAACGCCTAAA
LOC_Os05g50180
Os.8889.1.S1_at--355--3131Chr05:28674669..28674693 (25 bp)
AATTTCTTCACCATCTTGTTCGTAC
LOC_Os05g50180
Os.8889.1.S1_at--33--9591Chr05:28674656..28674680 (25 bp)
TCTTGTTCGTACGTTTCACCATTTG
LOC_Os05g50180
Target Sequence 
AGACGCACCTGGTGGACCAGGCGCAGCTGCTCGAGGTGTTCCGGGCGTTCGACCGCGACGGCAACGGCTTCATCTCCGCC
GCCGAGCTCGCCCGCTCCATGGCGCGCCTCGGCCAGCCGCTCACCTTCGAGGAGCTCACGCGGATGATGCGCGACGCCGA
CACCGACGGCGACGGGGTCATCAGCTTCAAGGAGTTCGCCGCCGTCATGGCCAAGTCCGCGCTTGACTTCCTCGGCGTCG
CCTGACCGACCTAACCACGCAACCAACCTTGCCCGCGTCTCTAGCTTAGCTGTTGATTCTTCTTCCATTTTTAGGACACA
ACGACTAAGTTTTTCTAGCGTAGCTATGACCATGTGTAACGCCTAAATGTGTACAAATTTTGATGAATTAATTTCTTCAC
CATCTTGTTCGTACGTTTCACCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis