Browse Element(s) Details


OsAffx.9402.1.S1_at

Description gb:NM_191471.1
DB_XREF= gi:34910025
GEN=P0413G02.14
TID=OsAffx.9402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0413G02.14 (P0413G02.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g501701/11Carboxylesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9402.1.S1_at--685--4591Chr01:33190742..33190766 (25 bp)
GCGAGGCGAGGTGCAAAGGAGCGGC
NONE
OsAffx.9402.1.S1_at--496--6531Chr01:33190501..33190525 (25 bp)
GATTTCGGCGGACCATCTCGTCACG
NONE
OsAffx.9402.1.S1_at--91--10611Chr01:33190498..33190522 (25 bp)
TTCGGCGGACCATCTCGTCACGGAT
NONE
OsAffx.9402.1.S1_at--947--8351Chr01:33190495..33190519 (25 bp)
GGCGGACCATCTCGTCACGGATCTA
NONE
OsAffx.9402.1.S1_at--450--4691Chr01:33190494..33190518 (25 bp)
GCGGACCATCTCGTCACGGATCTAA
NONE
OsAffx.9402.1.S1_at--924--8091Chr01:33190492..33190516 (25 bp)
GGACCATCTCGTCACGGATCTAAGA
NONE
OsAffx.9402.1.S1_at--379--5851Chr01:33190491..33190515 (25 bp)
GACCATCTCGTCACGGATCTAAGAG
NONE
OsAffx.9402.1.S1_at--470--1731Chr01:33190490..33190514 (25 bp)
ACCATCTCGTCACGGATCTAAGAGG
NONE
OsAffx.9402.1.S1_at--525--3551Chr01:33190488..33190512 (25 bp)
CATCTCGTCACGGATCTAAGAGGAA
NONE
OsAffx.9402.1.S1_at--1084--9491Chr01:33190486..33190510 (25 bp)
TCTCGTCACGGATCTAAGAGGAATA
NONE
OsAffx.9402.1.S1_at--856--4014Chr09:9436212..9436231 (20 bp)
CGTCACGGATCTAAGAGGAATATTC
NONE
Target Sequence 
GCGAGGCGAGGTGCAAAGGAGCGGCGGCGGCCGGTCGCGGAGGCGGAGGTCGGACACGAACGAGGCGGCGGCGGTCGCGG
ATGAGCGGCGGCAGTCGCGCGGAGGAGGACGGAGCGGCGCTGGGGGAGGGAGCAGGCGGATGAGGGACGAGCGGCCGTGG
CGGCGCCGCGGCAGAGCCGAGCGGGAGGCTGCGGGAGTTGACGCCGTTCTGTCCGTCGAAGTGGGATGGATTGGTCCGGC
CGATTTCGGCGGACCATCTCGTCACGGATCTAAGAGGAATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis