Browse Element(s) Details


Os.52893.1.S1_at

Description gb:AK069756.1
DB_XREF= gi:32979780
TID=Os.52893.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028E24, full insert sequence.
FL= gb:AK069756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5017011/11Carboxylesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52893.1.S1_at--448--2271Chr05:28665469..28665493 (25 bp)
AAATCATTGCCACATTTCTCTCCAG
LOC_Os05g50170
Os.52893.1.S1_at--909--3091Chr05:28665413..28665437 (25 bp)
AATAGCTCTTCTTCCTCAGATTGTG
LOC_Os05g50170
Os.52893.1.S1_at--1042--10051Chr05:28664274..28664297 (24 bp)
TAGTGAAACTTTTGCGGGTGTCCTT
LOC_Os05g50170
Os.52893.1.S1_at--885--7451Chr05:28664257..28664281 (25 bp)
GTGTCCTTAAACAAGCTGGTGCTAA
LOC_Os05g50170
Os.52893.1.S1_at--234--5771Chr05:28664040..28664064 (25 bp)
GACGTTATTTCTGTTATCCATGCTG
LOC_Os05g50170
Os.52893.1.S1_at--579--5311Chr05:28663996..28664020 (25 bp)
GAAGGATGCATTGGCACCTATCCCA
LOC_Os05g50170
Os.52893.1.S1_at--1131--4251Chr05:28663969..28663993 (25 bp)
CCGGCTGGTTTCTGAGTGGCAAATA
LOC_Os05g50170
Os.52893.1.S1_at--1052--2151Chr05:28663936..28663960 (25 bp)
ACACCGAATTAGTCCCTTCTGAAGA
LOC_Os05g50170
Os.52893.1.S1_at--1046--5451Chr05:28662107..28662131 (25 bp)
GAACGGAGCCCAATCCAATTGCAGA
LOC_Os05g50170
Os.52893.1.S1_at--966--51Chr05:28662090..28662114 (25 bp)
ATTGCAGAAGCCGTTGACATCACAG
LOC_Os05g50170
Os.52893.1.S1_at--1080--4751Chr05:28662044..28662068 (25 bp)
GCTGCACTCATGTCGTCTAAGTTTG
LOC_Os05g50170
Target Sequence 
AAATCATTGCCACATTTCTCTCCAGAAACTGTTGCCAAGAAATTATGTCCTGAAACAATAGCTCTTCTTCCTCAGATTGT
GCTTTTGCATGGAACGGATGATTATTCTATACCATTTTCTGCTAGTGAAACTTTTGCGGGTGTCCTTAAACAAGCTGGTG
CTAAAGCCAAGTTACTACTCTATGAAGGGAAAACACATACTGATGTATTTTTACAGGATCCACTAAGGGGTGGCAGGGAC
AAACTGGTTGAAGACGTTATTTCTGTTATCCATGCTGATGATGCAGATGCACGTGAGAAGGATGCATTGGCACCTATCCC
AGGCCGGCTGGTTTCTGAGTGGCAAATAAAGCTGGCACACCGAATTAGTCCCTTCTGAAGAGCTTGTGCAAAGAAAAGAT
GAAAGATTCCTAATTATAGTTTTGAGCTATATGTCATTCATGACGAGTATTGAAAGATTGCTGATTAGGAACGGAGCCCA
ATCCAATTGCAGAAGCCGTTGACATCACAGGGAATGCAAATGTGGTGCGGTGCTGCACTCATGTCGTCTAAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis