Browse Element(s) Details


OsAffx.21802.1.S1_at

Description gb:NM_190232.1
DB_XREF= gi:34907547
GEN=B1078G07.14
TID=OsAffx.21802.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.14 (B1078G07.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6682011/11receptor-like protein kinase, putative
LOC_Os07g336701/11patatin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed
LOC_Os01g66780NANA1+39104890..39105914hypothetical protein
LOC_Os01g66790NANA1+39106815..39112909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66800Os.46039.1.S1_at10/111+39114212..39115266hypothetical protein
LOC_Os01g66810Os.6266.1.S1_x_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66810Os.6266.1.S1_s_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_x_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.1.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860OsAffx.842.1.S1_x_at1/111+39145616..39149013ankyrin-kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21802.1.S1_at--62--211Chr01:39122950..39122974 (25 bp)
ATTTCCTCAAGGTCTGCAGAGCTGT
LOC_Os01g66820
OsAffx.21802.1.S1_at--158--31Chr01:39122984..39123008 (25 bp)
ATTGGCCTGGATCTGTCTAGTAACA
LOC_Os01g66820
OsAffx.21802.1.S1_at--200--1011Chr01:39123045..39123069 (25 bp)
AGGTTCCCTGTCTAACATCTTTGGA
LOC_Os01g66820
OsAffx.21802.1.S1_at--788--3171Chr01:39123096..39123120 (25 bp)
CAATACCAGCCAGCATCTCAAATAT
LOC_Os01g66820
OsAffx.21802.1.S1_at--908--11Chr01:39123191..39123215 (25 bp)
ATTGGCCGGTTGATTTCGTTTAATG
LOC_Os01g66820
OsAffx.21802.1.S1_at--603--4451Chr01:39123238..39123262 (25 bp)
GCCTATTCCATCCTCATTACAGAAA
LOC_Os01g66820
OsAffx.21802.1.S1_at--435--2651Chr01:39123287..39123311 (25 bp)
AACCAAGGCTTGTGTGGTGCTCCGT
LOC_Os01g66820
OsAffx.21802.1.S1_at--1095--7771Chr01:39123302..39123326 (25 bp)
GGTGCTCCGTTGGATAACTGTCCCA
LOC_Os01g66820
OsAffx.21802.1.S1_at--507--891Chr01:39123347..39123371 (25 bp)
AGGCTGCACAGAATCAACGACGAGT
LOC_Os01g66820
OsAffx.21802.1.S1_at--153--6872Chr01:39123436..39123460 (25 bp)
GTTTGTCTTCTCCAAGAGGCTTCAT
LOC_Os01g66820
OsAffx.21802.1.S1_at--997--3651Chr01:39123455..39123479 (25 bp)
CTTCATCCCTACATCTTTCAAATAT
LOC_Os01g66820
Target Sequence 
ATTTCCTCAAGGTCTGCAGAGCTGTACAAGCATGATTGGCCTGGATCTGTCTAGTAACATTTTTTCAGGACCAATCCCTG
CTGACATCGCCACGCAGGTTCCCTGTCTAACATCTTTGGATCTCTCATACAACAGTTTTTCAGGTCCAATACCAGCCAGC
ATCTCAAATATGACATACCTGAACACACTCAACCTTCAGCACAACCAATTCAGCGGTGAAATTCCAAGGCAATTCGATTC
AATTGGCCGGTTGATTTCGTTTAATGTTGCTGATAATTTACTATCAGGGCCTATTCCATCCTCATTACAGAAATTTTCGG
CTTCAAATTTTGCTGAAAACCAAGGCTTGTGTGGTGCTCCGTTGGATAACTGTCCCAGGAGGAGGAGATGGAGACTCAGG
CTGCACAGAATCAACGACGAGTCCAGCATCGGAGCGGCTGTTGGTTTCGTCGTTGGGTTCGTGGTGGCCTTCTACTTCCC
TCACTGGTTTGTCTTCTCCAAGAGGCTTCATCCCTACATCTTTCAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis