Browse Element(s) Details


OsAffx.842.1.S1_x_at

Description gb:NM_192350.1
DB_XREF= gi:34911783
GEN=OJ1316_H05.19
TID=OsAffx.842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1316_H05.19 (OJ1316_H05.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g668601/11ankyrin-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_x_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.1.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860OsAffx.842.1.S1_x_at1/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66890Os.26388.3.S1_x_at11/111+39170578..39173385TAZ zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.842.1.S1_x_at--371--4352Chr01:26509691..26509715 (25 bp)
CCAAGTTGCCGGAGCCGTCACTCAG
NONE
OsAffx.842.1.S1_x_at--725--1131Chr01:26509733..26509757 (25 bp)
AGTCTGGCACCGACGAGCCGAACAA
NONE
OsAffx.842.1.S1_x_at--523--5871Chr01:26509747..26509771 (25 bp)
GAGCCGAACAATAAGTCTGCACTGG
NONE
OsAffx.842.1.S1_x_at--174--351Chr01:26509757..26509781 (25 bp)
ATAAGTCTGCACTGGTACCGACGTC
NONE
OsAffx.842.1.S1_x_at--1048--9471Chr01:26509762..26509786 (25 bp)
TCTGCACTGGTACCGACGTCCGCGT
NONE
OsAffx.842.1.S1_x_at--534--7251Chr01:26509779..26509803 (25 bp)
GTCCGCGTCCATGCCCAGAAGGAAG
NONE
OsAffx.842.1.S1_x_at--38--4351Chr01:26509793..26509952 (25 bp)
CCAGAAGGAAGCAGGGACGCATGCT
NONE
OsAffx.842.1.S1_x_at--519--4251Chr01:26509961..26509985 (25 bp)
CCGTGCGACGCAACGAGGAGTGGAT
NONE
OsAffx.842.1.S1_x_at--403--6311Chr01:26509989..26510013 (25 bp)
GATGAGCAACAGAGACGAGCACCAG
NONE
OsAffx.842.1.S1_x_at--141--2151Chr01:26509997..26510021 (25 bp)
ACAGAGACGAGCACCAGAGCTGCAT
NONE
OsAffx.842.1.S1_x_at--178--1371Chr01:26510012..26510036 (25 bp)
AGAGCTGCATGCCACAGGCCTCATC
NONE
Target Sequence 
CCAAGTTGCCGGAGCCGTCACTCAGCCTCCCTCTTCTCCGCAAGTCTGGCACCGACGAGCCGAACAATAAGTCTGCACTG
GTACCGACGTCCGCGTCCATGCCCAGAAGGAAGCAGGGACGCATGCTGCGGGCCGCCGTGCGACGCAACGAGGAGTGGAT
GATGATGAGCAACAGAGACGAGCACCAGAGCTGCATGCCACAGGCCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.842.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis