Browse Element(s) Details


OsAffx.1081.1.S1_at

Description gb:NM_190239.1
DB_XREF= gi:34907561
GEN=B1078G07.22
TID=OsAffx.1081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.22 (B1078G07.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6687011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_x_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.1.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860OsAffx.842.1.S1_x_at1/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66890Os.26388.3.S1_x_at11/111+39170578..39173385TAZ zinc finger family protein, expressed
LOC_Os01g66900NANA1+39179845..39181126membrane protein, putative, expressed
LOC_Os01g66910OsAffx.2425.1.S1_s_at11/111+39186262..39187063hypothetical protein
LOC_Os01g66910OsAffx.2425.1.S1_at1/111+39186262..39187063hypothetical protein
LOC_Os01g66920Os.34226.1.S2_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66920Os.34226.1.S1_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1081.1.S1_at--609--2931Chr01:39165956..39165980 (25 bp)
AAGGCATCAGACACTGCATCCGCGT
LOC_Os01g66870
OsAffx.1081.1.S1_at--562--1931Chr01:39165893..39165917 (25 bp)
ACGGACCTACTATCTTCTTCGACAA
LOC_Os01g66870
OsAffx.1081.1.S1_at--624--2811Chr01:39165870..39165894 (25 bp)
AAGATTAGCGACCTCTCTCACGAAT
LOC_Os01g66870
OsAffx.1081.1.S1_at--1048--4351Chr01:39165688..39165712 (25 bp)
CCAGCGAAGAGTTAGCCGGCGAATC
LOC_Os01g66870
OsAffx.1081.1.S1_at--686--3231Chr01:39165664..39165688 (25 bp)
CAAGAGATCTCGCAGCACGTATTCT
LOC_Os01g66870
OsAffx.1081.1.S1_at--275--111Chr01:39165644..39165668 (25 bp)
ATTCTGCAGCTTATCCATGACGTTG
LOC_Os01g66870
OsAffx.1081.1.S1_at--191--691Chr01:39165628..39165652 (25 bp)
ATGACGTTGAAGACCAAGCTCGCGA
LOC_Os01g66870
OsAffx.1081.1.S1_at--36--8351Chr01:39165597..39165621 (25 bp)
GGCTGGCGCCAAGTTTACTGATCAG
LOC_Os01g66870
OsAffx.1081.1.S1_at--109--9931Chr01:39165582..39165606 (25 bp)
TACTGATCAGGACGTGTTGCCCGGA
LOC_Os01g66870
OsAffx.1081.1.S1_at--18--4111Chr01:39165555..39165579 (25 bp)
CGAACAGTGCGCAGACCGGAGTTGT
LOC_Os01g66870
OsAffx.1081.1.S1_at--1157--7531Chr01:39165522..39165546 (25 bp)
GTGGCTGTTCGGGAGCTGCACTTCA
LOC_Os01g66870
Target Sequence 
AAGGCATCAGACACTGCATCCGCGTCGCCGCCGCCACCGCCCGACGCGCACGCTCTCGCGTTCACGGACCTACTATCTTC
TTCGACAAGATTAGCGACCTCTCTCACGAATAGCCAAGTGAGTTTGGCGGCACCGGCCGACCACCTTGCACACAGCATGT
CTATTTTAGCTGAGAAGATCGTCGAGGGGTCGAACGGCTTAGAGGAAGCCGCTGCAAATGTGAAGAATGCCGCTTCAACT
CTGCTCGTCGCCGCTGACAATCCAAAAGCCAGCGAAGAGTTAGCCGGCGAATCAAGAGATCTCGCAGCACGTATTCTGCA
GCTTATCCATGACGTTGAAGACCAAGCTCGCGAGGATGCGGCTGGCGCCAAGTTTACTGATCAGGACGTGTTGCCCGGAT
GCGAACAGTGCGCAGACCGGAGTTGTCTCTGCCCGTGGCTGTTCGGGAGCTGCACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis