Browse Element(s) Details


Os.34226.1.S2_at

Description gb:AK072389.1
DB_XREF= gi:32982412
TID=Os.34226.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.30 (B1078G07.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075F19, full insert sequence.
FL= gb:AK072389.1 gb:AK121960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6692011/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66890Os.26388.3.S1_x_at11/111+39170578..39173385TAZ zinc finger family protein, expressed
LOC_Os01g66900NANA1+39179845..39181126membrane protein, putative, expressed
LOC_Os01g66910OsAffx.2425.1.S1_s_at11/111+39186262..39187063hypothetical protein
LOC_Os01g66910OsAffx.2425.1.S1_at1/111+39186262..39187063hypothetical protein
LOC_Os01g66920Os.34226.1.S2_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66920Os.34226.1.S1_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66930OsAffx.26327.1.S1_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26327.1.S1_s_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930Os.15412.1.S1_x_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26326.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.16519.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34226.1.S2_at--1159--3671Chr01:39194145..39194169 (25 bp)
CTTTGCCTGGCAGTTCTGTGGAAAC
LOC_Os01g66920
Os.34226.1.S2_at--357--3851Chr01:39194265..39194289 (25 bp)
CTGCAGGGCTCTTGTGAAGGCTTAT
LOC_Os01g66920
Os.34226.1.S2_at--607--2931Chr01:39194281..39194305 (25 bp)
AAGGCTTATGCGATGAACCCTGTAA
LOC_Os01g66920
Os.34226.1.S2_at--990--9751Chr01:39194303..39194327 (25 bp)
TAATCCACTCGCCAGTACATTTCTT
LOC_Os01g66920
Os.34226.1.S2_at--376--91Chr01:39194332..39194356 (25 bp)
ATTCCAGTGCTCATAGCGTTTGCTA
LOC_Os01g66920
Os.34226.1.S2_at--315--331Chr01:39194356..39194380 (25 bp)
ATCTACAAAACCTCGTCACTTTAGC
LOC_Os01g66920
Os.34226.1.S2_at--9--2051Chr01:39194373..39194397 (25 bp)
ACTTTAGCTGTTCCAGAGCCTTTTC
LOC_Os01g66920
Os.34226.1.S2_at--412--5871Chr01:39194388..39194412 (25 bp)
GAGCCTTTTCTTGTAGCATTGTTGT
LOC_Os01g66920
Os.34226.1.S2_at--673--8271Chr01:39194459..39194483 (25 bp)
GGCATCCCTGTGAATCTGGTGGTAA
LOC_Os01g66920
Os.34226.1.S2_at--56--4751Chr01:39194529..39194553 (25 bp)
GCTGTTAACATCTTGCTGCACATAA
LOC_Os01g66920
Os.34226.1.S2_at--1155--5711Chr01:39194560..39194584 (25 bp)
GACTGCACGGTTATTCTTCAGAACT
LOC_Os01g66920
Target Sequence 
CTTTGCCTGGCAGTTCTGTGGAAACATTGGAAGCANNNCTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAAT
CCACTCGCCAGTACATTTCTTCTTCATTCCAGTGCTCATAGCGTTTGCTATCTACAAAACCTCGTCACTTTAGCTGTTCC
AGAGCCTTTTCTTGTAGCATTGTTGTATTGCTGTCAAGTTTCAAGGACACTGGAAATATTTAGCGTTACGCAGGCATCCC
TGTGAATCTGGTGGTAACTGTAGGACAACAGATTTGTTAGATCATTTAACTTGCGTAAAGATGCTGTTAACATCTTGCTG
CACATAATTGTTAGACTGCACGGTTATTCTTCAGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34226.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis