Browse Element(s) Details


OsAffx.2425.1.S1_s_at

Description gb:NM_190245.1
DB_XREF= gi:34907573
GEN=B1078G07.28
TID=OsAffx.2425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.28 (B1078G07.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6691011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66890Os.26388.3.S1_x_at11/111+39170578..39173385TAZ zinc finger family protein, expressed
LOC_Os01g66900NANA1+39179845..39181126membrane protein, putative, expressed
LOC_Os01g66910OsAffx.2425.1.S1_s_at11/111+39186262..39187063hypothetical protein
LOC_Os01g66910OsAffx.2425.1.S1_at1/111+39186262..39187063hypothetical protein
LOC_Os01g66920Os.34226.1.S2_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66920Os.34226.1.S1_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66930OsAffx.26327.1.S1_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26327.1.S1_s_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930Os.15412.1.S1_x_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26326.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.16519.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2425.1.S1_s_at--333--7811Chr01:39186992..39187016 (25 bp)
GGTCGTCGGCCATCCAGTGATCCAA
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--1086--571Chr01:39186981..39187005 (25 bp)
ATCCAGTGATCCAATTCGGCGATGG
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--575--11Chr01:39186940..39186964 (25 bp)
GTTGGTTACCCGCTGCCAAAGGAGC
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--511--4531Chr01:39186902..39186926 (25 bp)
GCCGCCGGCGACATTGCAACGAGGA
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--734--5671Chr01:39186893..39186917 (25 bp)
GACATTGCAACGAGGACGCCCCGAG
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--586--9131Chr01:39186850..39186874 (25 bp)
TGCGGGCCCTGCGAGATATTCACAG
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--316--4271Chr01:39186848..39186867 (20 bp)
CCTGCGAGATATTCACAGTGACATT
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--485--5671Chr01:39186739..39186763 (25 bp)
GACATTTATGGTTGTCGTCGCGGTC
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--234--10791Chr01:39186728..39186752 (25 bp)
TTGTCGTCGCGGTCGAATCGTTAAC
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--467--5231Chr01:39186714..39186738 (25 bp)
GAATCGTTAACTTACTTCCTCCTCG
LOC_Os01g66910
OsAffx.2425.1.S1_s_at--427--10671Chr01:39186699..39186723 (25 bp)
TTCCTCCTCGCCATGATTGGCATGG
LOC_Os01g66910
Target Sequence 
GGTCGTCGGCCATCCAGTGATCCAATTCGGCGATGGGGCGCCGCCGGCCGTCGTTGGTTACCCGCTGCCAAAGGAGCCGC
CGCCACCACCGCCGCCGGCGACATTGCAACGAGGACGCCCCGAGCAGCGGTGCTCCTCCCGCTGCGGGCCCTGCGAGATA
TTCACAGTGACATTTATGGTTGTCGTCGCGGTCGAATCGTTAACTTACTTCCTCCTCGCCATGATTGGCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2425.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis