Browse Element(s) Details


OsAffx.23949.1.S1_at

Description gb:NM_190250.1
DB_XREF= gi:34907583
GEN=B1078G07.33
TID=OsAffx.23949.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.33 (B1078G07.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g669507/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66920Os.34226.1.S2_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66920Os.34226.1.S1_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66930OsAffx.26327.1.S1_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26327.1.S1_s_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930Os.15412.1.S1_x_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26326.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.16519.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23949.1.S1_at--838--1071Chr01:39216435..39216459 (25 bp)
AGGGCAAGTTGCATTTCTCTGTAGT
NONE
OsAffx.23949.1.S1_at--752--4951Chr01:39216427..39216449 (23 bp)
GCATTTCTCTGTAGTTCAGCCTGAA
NONE
OsAffx.23949.1.S1_at--963--5491Chr01:39216154..39216178 (25 bp)
GAACAGACCAAGAACATCGCAACAA
NONE
OsAffx.23949.1.S1_at--1036--5511Chr01:39216108..39216132 (25 bp)
GAAAAACATCAAATCGACCGCTGAA
NONE
OsAffx.23949.1.S1_at--635--6431Chr01:39216029..39216053 (25 bp)
GATCATTCGTAGACAGTTCATTGGC
LOC_Os01g66950
OsAffx.23949.1.S1_at--976--1211Chr01:39216015..39216039 (25 bp)
AGTTCATTGGCGTCAGGATGGGCAA
LOC_Os01g66950
OsAffx.23949.1.S1_at--441--8131Chr01:39215921..39215945 (25 bp)
GGACATCTATGCCATGTGGGCCCTA
LOC_Os01g66950
OsAffx.23949.1.S1_at--241--7671Chr01:39215870..39215894 (25 bp)
GGGATTGACGCAACGAGTCCTCGGT
LOC_Os01g66950
OsAffx.23949.1.S1_at--845--651Chr01:39215743..39215767 (25 bp)
ATGACACGTCGGACCCAGCTTGGTG
LOC_Os01g66950
OsAffx.23949.1.S1_at--84--10831Chr01:39215724..39215748 (25 bp)
TTGGTGGGCCCGTCCTAGTAGAGCT
LOC_Os01g66950
OsAffx.23949.1.S1_at--405--1611Chr01:39215703..39215727 (25 bp)
AGCTGGACGGTAGTGGTTGCCTTTT
LOC_Os01g66950
Target Sequence 
AGGGCAAGTTGCATTTCTCTGTAGTTCAGCCTGAAAAAAAGAGTACTTCCAAATCAAAGGACGAACAGACCAAGAACATC
GCAACAAACATAGTACAAAAGAATCAAAGAAAAACATCAAATCGACCGCTGAATTCGATGTTAAAAATGGGCAACTGGCA
TAATAAACAACACATGGGAATATCAAAGATCATTCGTAGACAGTTCATTGGCGTCAGGATGGGCAAAAACAATGTGTACT
TTTTCCGTGGGTGCGGGAGCCCGTGTGCGCGTAGCCCGACCCTGGAATCTCCGGGGGACATCTATGCCATGTGGGCCCTA
CGGCCAGAAAGGTCGTGGGGCCCACGGGGATTGACGCAACGAGTCCTCGGTGGCGGCTTCGCGGCCGCCTGGGTCGCTGT
CGGTGGGCCTCGTGGGGGTGAATGCTGGGGCCCACTCGTCCTCGTTGTCCTGCTGTGTGGGGCCCACTCGTCGATGACAC
GTCGGACCCAGCTTGGTGGGCCCGTCCTAGTAGAGCTGGACGGTAGTGGTTGCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis