Browse Element(s) Details


Os.6371.1.S1_at

Description gb:AK067698.1
DB_XREF= gi:32977716
TID=Os.6371.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chloroplast membrane-associated 30 kD protein (B1078G07.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116L10, full insert sequence.
FL= gb:AK099166.1 gb:AK058611.1 gb:AK067698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6700011/11membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6371.1.S1_at--766--9831Chr01:39239568..39239592 (25 bp)
TAAATACTAGTGGTGCTCTTTCAGC
LOC_Os01g67000
Os.6371.1.S1_at--161--1331Chr01:39238708..39238732 (25 bp)
AGAGGCACTCGGTCAGTTGGCAACT
LOC_Os01g67000
Os.6371.1.S1_at--160--9071Chr01:39238578..39238602 (25 bp)
TGCATTGCTTGAGACTTCATCGGTT
LOC_Os01g67000
Os.6371.1.S1_at--933--491Chr01:39238560..39238584 (25 bp)
ATCGGTTGATGATGACCTTGCACAA
LOC_Os01g67000
Os.6371.1.S1_at--1107--2511Chr01:39238221..39238245 (25 bp)
AACTTCCTCCAGGTAGAACGGCAGT
LOC_Os01g67000
Os.6371.1.S1_at--110--4551Chr01:39238176..39238200 (25 bp)
GCCCTTTCCGAGACATCGAGATTGA
LOC_Os01g67000
Os.6371.1.S1_at--201--10051Chr01:39238111..39238135 (25 bp)
TAGATTATGCAGTTTCCTTGTCCCT
LOC_Os01g67000
Os.6371.1.S1_at--898--8411Chr01:39238080..39238104 (25 bp)
GGCCTGACGAATCCTTTAGACTGAA
LOC_Os01g67000
Os.6371.1.S1_at--957--991Chr01:39238038..39238062 (25 bp)
AGGATGGTCTTCAGGTTTCTCCAAT
LOC_Os01g67000
Os.6371.1.S1_at--252--10271Chr01:39238008..39238032 (25 bp)
TTTGTTGAACCACCAGTGCAGCCTT
LOC_Os01g67000
Os.6371.1.S1_at--893--5891Chr01:39237868..39237892 (25 bp)
GAGCTGACTCTGCATATTTTAGTGG
LOC_Os01g67000
Target Sequence 
TAAATACTAGTGGTGCTCTTTCAGCATTTGAGAAAATGGAGGAAAAAGTTATGGCAATGGAGTCCCAAGCAGAGGCACTC
GGTCAGTTGGCAACTGATGATCTTGAAGGAAAGTTTGCATTGCTTGAGACTTCATCGGTTGATGATGACCTTGCACAAAT
GAAAAAGGAAATTTCTGGAAGCTCTTCGAAAGGAGAACTTCCTCCAGGTAGAACGGCAGTCAGCAATTCAGGAGCAGCGC
GCCCTTTCCGAGACATCGAGATTGAGAATGAGCTAAATGAGCTGCGGAAGAAGGCCAATGAATATTAGATTATGCAGTTT
CCTTGTCCCTGCACCAGGCCTGACGAATCCTTTAGACTGAAGAACCCCGGGAAGATATAGGATGGTCTTCAGGTTTCTCC
AATGCCCCTTTGTTGAACCACCAGTGCAGCCTTTTTTCCCCCCAAGAGTATAATGGATGCGTAAAAAAAATTCTACATTT
TGCAGTGTGATTGACATTGACTGTACAGTTNAGCTACATAGTTATGTAAAAGTCATATTGCTCTTTCTAGAGCTGACTCT
GCATATTTTAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis