Browse Element(s) Details


Os.7137.1.S1_at

Description gb:AK067623.1
DB_XREF= gi:32977641
TID=Os.7137.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.36 (B1078G07.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108L20, full insert sequence.
FL= gb:AK104876.1 gb:AK067623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6698011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7137.1.S1_at--137--10051Chr01:39227569..39227593 (25 bp)
TAGTAGTTCAGAGAAGTGCTTCACA
LOC_Os01g66980
Os.7137.1.S1_at--703--9071Chr01:39227553..39227577 (25 bp)
TGCTTCACATTTGTATCACTCCTTG
LOC_Os01g66980
Os.7137.1.S1_at--781--211Chr01:39227545..39227569 (25 bp)
ATTTGTATCACTCCTTGCTATTCTC
LOC_Os01g66980
Os.7137.1.S1_at--724--1991Chr01:39227536..39227560 (25 bp)
ACTCCTTGCTATTCTCGCTAGAGAA
LOC_Os01g66980
Os.7137.1.S1_at--305--5171Chr01:39227497..39227521 (25 bp)
GCAAGCAAACAATTTCAGATGAGAC
LOC_Os01g66980
Os.7137.1.S1_at--444--3131Chr01:39227487..39227511 (25 bp)
AATTTCAGATGAGACATTGCAGTTG
LOC_Os01g66980
Os.7137.1.S1_at--103--3611Chr01:39227473..39227497 (25 bp)
CATTGCAGTTGATATGCAGGTTGCA
LOC_Os01g66980
Os.7137.1.S1_at--930--231Chr01:39227462..39227486 (25 bp)
ATATGCAGGTTGCAAGTGACACATC
LOC_Os01g66980
Os.7137.1.S1_at--733--10251Chr01:39227430..39227454 (25 bp)
TTTGTGTACTTTGTGCTGAGTGCTG
LOC_Os01g66980
Os.7137.1.S1_at--808--2031Chr01:39227423..39227447 (25 bp)
ACTTTGTGCTGAGTGCTGACGACCA
LOC_Os01g66980
Os.7137.1.S1_at--750--3851Chr01:39227415..39227439 (25 bp)
CTGAGTGCTGACGACCACTGAACAA
LOC_Os01g66980
Target Sequence 
TAGTAGTTCAGAGAAGTGCTTCACATTTGTATCACTCCTTGCTATTCTCGCTAGAGAATGTTCTTCAGAAGAGCAAGCAA
ACAATTTCAGATGAGACATTGCAGTTGATATGCAGGTTGCAAGTGACACATCNATGAGATTTGTGTACTTTGTGCTGAGT
GCTGACGACCACTGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis