Browse Element(s) Details


Os.36346.1.S1_a_at

Description gb:AK063649.1
DB_XREF= gi:32973667
TID=Os.36346.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.36346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.42 (B1078G07.42), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A10, full insert sequence.
FL= gb:AK063649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6704011/11rhomboid family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36346.1.S1_a_at--16--7731Chr01:39256269..39256293 (25 bp)
GGGTGGATGACAATTCTGGCTACAA
LOC_Os01g67040
Os.36346.1.S1_a_at--380--8491Chr01:39256285..39256309 (25 bp)
TGGCTACAAAGCAACCGTCGTCGAA
LOC_Os01g67040
Os.36346.1.S1_a_at--163--2631Chr01:39256297..39256321 (25 bp)
AACCGTCGTCGAAGCTGAATATCTT
LOC_Os01g67040
Os.36346.1.S1_a_at--1094--10631Chr01:39256347..39256371 (25 bp)
TTCGCGCCGTTTGAATCGCTGATAT
LOC_Os01g67040
Os.36346.1.S1_a_at--664--131Chr01:39256370..39256394 (25 bp)
ATTCACATCTATCATGGTTCCTCAG
LOC_Os01g67040
Os.36346.1.S1_a_at--345--7911Chr01:39256385..39256409 (25 bp)
GGTTCCTCAGGCGAGTTTCATTGGC
LOC_Os01g67040
Os.36346.1.S1_a_at--756--6831Chr01:39256399..39256423 (25 bp)
GTTTCATTGGCCACTTATCAGGGAT
LOC_Os01g67040
Os.36346.1.S1_a_at--531--411Chr01:39256415..39256439 (25 bp)
ATCAGGGATCATTGTTGGCTACTCA
LOC_Os01g67040
Os.36346.1.S1_a_at--642--10231Chr01:39256473..39256497 (25 bp)
TATTGGGCTATCACCATGTTTGGTT
LOC_Os01g67040
Os.36346.1.S1_a_at--865--6051Chr01:39256560..39256584 (25 bp)
GAGATTGAGCCAGTTACGGATCCCT
LOC_Os01g67040
Os.36346.1.S1_a_at--1117--951Chr01:39256623..39256647 (25 bp)
AGGACTCTTCAGATGGATGTGCTTC
LOC_Os01g67040
Target Sequence 
GGGTGGATGACAATTCTGGCTACAAAGCAACCGTCGTCGAAGCTGAATATCTTCGGGGTTCTTTCGCTGCCTATCAGCTT
CGCGCCGTTTGAATCGCTGATATTCACATCTATCATGGTTCCTCAGGCGAGTTTCATTGGCCACTTATCAGGGATCATTG
TTGGCTACTCAATTGCCTGGGGTTTGGTTCATGGAATGAATAACTATTGGGCTATCACCATGTTTGGTTGGATTGTGCTT
GTGTTTGTCTTGAGCTTGAAGCGTACAGGCTCGATGGATTTGAGATTTATTGAGATTGAGCCAGTTACGGATCCCTCGCT
GCCTTCTGTTGGNGTAGTTGCCTCAAGAAATGGCAGGACTCTTCAGATGGATGTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36346.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis