Browse Element(s) Details


Os.9213.1.S1_a_at

Description gb:AK099626.1
DB_XREF= gi:32984835
TID=Os.9213.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calreticulin (P0696G06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055B02, full insert sequence.
FL= gb:AK099626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6705411/11Calreticulin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9213.1.S1_a_at--396--8851Chr01:39258345..39258369 (25 bp)
TGATCGGCACCGTGGCAGGGATTAC
LOC_Os01g67054
Os.9213.1.S1_a_at--1160--2331Chr01:39257786..39257882 (25 bp)
AAAGACGTCATAGGGATCACTGGGA
LOC_Os01g67054
Os.9213.1.S1_a_at--586--5532Chr09:10780300..10780729 (25 bp)
GAAAAATGCTTTCTTCCTAGGAGAA
NONE
Os.9213.1.S1_a_at--1034--1431Chr01:39257627..39257651 (25 bp)
AGAAGCTGGAATTTGCATGGTCATT
LOC_Os01g67054
Os.9213.1.S1_a_at--1107--6211Chr01:39257572..39257596 (25 bp)
GAGGCCAGAATAGCCGCAAGTGTTC
LOC_Os01g67054
Os.9213.1.S1_a_at--42--9251Chr01:39257549..39257573 (25 bp)
TCCTTGCTGCGTGTGCTGAAAATTT
LOC_Os01g67054
Os.9213.1.S1_a_at--522--5351Chr01:39257489..39257513 (25 bp)
GAAGATCATTCCTTTTGGACAGCAG
LOC_Os01g67054
Os.9213.1.S1_a_at--926--8131Chr01:39257473..39257497 (25 bp)
GGACAGCAGGGCATACGATTCTACT
LOC_Os01g67054
Os.9213.1.S1_a_at--140--4971Chr01:39257463..39257487 (25 bp)
GCATACGATTCTACTTACCAGCAAC
LOC_Os01g67054
Os.9213.1.S1_a_at--497--1871Chr01:39257404..39257428 (25 bp)
ACGTTGTAACGTTGCGACTTGCGAA
LOC_Os01g67054
Os.9213.1.S1_a_at--690--7711Chr01:39257366..39257390 (25 bp)
GGGTGATGTTCTGCCACTTTTTGAA
LOC_Os01g67054
Target Sequence 
TGATCGGCACCGTGGCAGGGATTACAAGGACAGATACAAAAGACGTCATAGGGATCACTGGGATGATGACTACCATGATG
AGCTTTGAAATCACGGAAAAATGCTTTCTTCCTAGGAGAAGCTGGAATTTGCATGGTCATTGCTTATAATTGTTACCAAT
AAATGATCTGGGAGGCCAGAATAGCCGCAAGTGTTCCTTGCTGCGTGTGCTGAAAATTTGAATATCCGGATTGGAATGAA
ATGAACAAAAGCCTGAAGATCATTCCTTTTGGACAGCAGGGCATACGATTCTACTTACCAGCAACACGTTGTTTTTAGTT
GTGAATTGGTGAAATGTTGACGTTGTAACGTTGCGACTTGCGAATATAATGTGCACGGGGTGATGTTCTGCCACTTTTTG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9213.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis