Browse Element(s) Details


Os.6275.1.S1_at

Description gb:AK107067.1
DB_XREF= gi:32992276
TID=Os.6275.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C27797(C52876)~unknown protein (P0696G06.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E07, full insert sequence.
FL= gb:AK107067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6711011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6275.1.S1_at--13--4471Chr01:39286466..39286490 (25 bp)
GCCTCCTACCATGTCTGAAACTCTG
LOC_Os01g67110
Os.6275.1.S1_at--630--9472Chr02:4937159..4937462 (25 bp)
TCTGAAACTCTGAAGCCCTCATCAC
NONE
Os.6275.1.S1_at--875--1991Chr01:39286416..39286440 (25 bp)
ACTCCGCCATTGGTGCGACCGAAGA
LOC_Os01g67110
Os.6275.1.S1_at--1147--4431Chr01:39286411..39286435 (25 bp)
GCCATTGGTGCGACCGAAGAGTCCA
LOC_Os01g67110
Os.6275.1.S1_at--234--8611Chr01:39286406..39286430 (25 bp)
TGGTGCGACCGAAGAGTCCATTCTT
LOC_Os01g67110
Os.6275.1.S1_at--413--2791Chr01:39286395..39286419 (25 bp)
AAGAGTCCATTCTTCGTGTGTTGTT
LOC_Os01g67110
Os.6275.1.S1_at--2--1151Chr01:39286392..39286416 (25 bp)
AGTCCATTCTTCGTGTGTTGTTTAG
LOC_Os01g67110
Os.6275.1.S1_at--263--4331Chr01:39286389..39286413 (25 bp)
CCATTCTTCGTGTGTTGTTTAGATT
LOC_Os01g67110
Os.6275.1.S1_at--783--9571Chr01:39286385..39286409 (25 bp)
TCTTCGTGTGTTGTTTAGATTATTA
LOC_Os01g67110
Os.6275.1.S1_at--399--231Chr01:39286326..39286350 (25 bp)
ATATTTTCATGTGTACTCGAATTCT
LOC_Os01g67110
Os.6275.1.S1_at--1018--10311Chr01:39286322..39286346 (25 bp)
TTTCATGTGTACTCGAATTCTTTTG
LOC_Os01g67110
Target Sequence 
GCCTCCTACCATGTCTGAAACTCTGAAGCCCTCATCACCTCCTCCACTCCACTCCGCCATTGGTGCGACCGAAGAGTCCA
TTCTTCGTGTGTTGTTTAGATTATTAGTAGAATNACTCTCATGATTCTTNTGTACTAGTGATATTTTCATGTGTACTCGA
ATTCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis