Browse Element(s) Details


Os.11976.1.S1_a_at

Description gb:AK120594.1
DB_XREF= gi:37990217
TID=Os.11976.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.11976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU057282(S21302),AU057281(S21302)~similar to Arabidopsis thaliana chromosome 3, At3g59780~unknown protein (P0696G06.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147G23, full insert sequence.
FL= gb:AK060416.1 gb:AK120594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6712010/11Rhodanese-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11976.1.S1_a_at--1106--9651Chr01:39289854..39289878 (25 bp)
TCAGCAGCAGCGTACGCTTTGCTAG
LOC_Os01g67120
Os.11976.1.S1_a_at--1063--4611NONE
GCGTACGCTTTGCTAGAATGGGAAA
NONE
Os.11976.1.S1_a_at--243--5291Chr01:39289154..39289178 (25 bp)
GAATGGGAAACGACTCTGCAATACA
LOC_Os01g67120
Os.11976.1.S1_a_at--999--8151Chr01:39289149..39289173 (25 bp)
GGAAACGACTCTGCAATACATAGGT
LOC_Os01g67120
Os.11976.1.S1_a_at--476--10071Chr01:39289131..39289153 (23 bp)
TAGGTGTTCTAAGCCTTGGTCTGAC
LOC_Os01g67120
Os.11976.1.S1_a_at--227--1691Chr01:39288946..39289142 (25 bp)
AGCCTTGGTCTGACTATCTATCTGC
LOC_Os01g67120
Os.11976.1.S1_a_at--377--3711Chr01:39288915..39288939 (25 bp)
CTACGTACGAGGGTTCAGAGGATCT
LOC_Os01g67120
Os.11976.1.S1_a_at--281--1491Chr01:39288644..39288668 (25 bp)
AGCAAGATTGGCTTGGCGACTTCCC
LOC_Os01g67120
Os.11976.1.S1_a_at--764--4111Chr01:39288577..39288601 (25 bp)
CGAAGCACGAGTCGCAGCCGTCTGA
LOC_Os01g67120
Os.11976.1.S1_a_at--1024--4011Chr01:39288559..39288583 (25 bp)
CGTCTGACGCCGAGGCAGACAGTTT
LOC_Os01g67120
Os.11976.1.S1_a_at--1106--5031Chr01:39288545..39288569 (25 bp)
GCAGACAGTTTGGTCTCTGAAGCGT
LOC_Os01g67120
Target Sequence 
TCAGCAGCAGCGTACGCTTTGCTAGAATGGGAAACGACTCTGCAATACATAGGTGTTCTAAGCCTTGGTCTGACTATCTA
TCTGCGNTTCTCTACGTACGAGGGTTCAGAGGATCTGGAGCAAGATCTAAAACTGCTGCTTTCCCCGTTAAGAGTAGGCG
CGGAGGCGNTTCTCGTGGGCNGCCNAAGAAGCTGGAGCCAAGCAAGATTGGCTTGGCGACTTCCCCCTCCACGACGGCGG
TCCAAGACCGGGTTCTCCAGGCCGCCGCGAAGCACGAGTCGCAGCCGTCTGACGCCGAGGCAGACAGTTTGGTCTCTGAA
GCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11976.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis