Browse Element(s) Details


Os.15584.1.S1_at

Description gb:AK072393.1
DB_XREF= gi:32982416
TID=Os.15584.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0674H09.13 (P0674H09.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080E06, full insert sequence.
FL= gb:AK072393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6717011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.2.S1_x_at11/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.1.S1_at10/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67200NANA1+39325126..39326849ribosomal protein L13 family protein, putative
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g67229NANA1+39338346..39338807NA
LOC_Os01g67240Os.38100.1.S1_at11/111+39340675..39344644Formin Homology 2 Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15584.1.S1_at--485--5771Chr01:39316423..39316447 (25 bp)
GACGATCTTGATCAGCTGCTTGAAC
LOC_Os01g67170
Os.15584.1.S1_at--52--1591Chr01:39316436..39316460 (25 bp)
AGCTGCTTGAACTTGGTACCTCCAA
LOC_Os01g67170
Os.15584.1.S1_at--834--6851Chr01:39316689..39316713 (25 bp)
GTTTGCTTGCTTTAGATGATCCTCA
LOC_Os01g67170
Os.15584.1.S1_at--501--691Chr01:39316718..39316742 (25 bp)
ATGAGTTCAACAACCCACCAGTTTT
LOC_Os01g67170
Os.15584.1.S1_at--1149--6271Chr01:39316767..39316791 (25 bp)
GATGTATGTACAGGCTTCGCTCTGT
LOC_Os01g67170
Os.15584.1.S1_at--1156--8771Chr01:39316789..39316813 (25 bp)
TGTTTTCCAACCTCAGATGCGCATC
LOC_Os01g67170
Os.15584.1.S1_at--561--9151Chr01:39316806..39316830 (25 bp)
TGCGCATCTTTAGGCCATGAATTCT
LOC_Os01g67170
Os.15584.1.S1_at--103--651Chr01:39317064..39317088 (25 bp)
ATGCATTTCTGGACGTGCTAGCCGC
LOC_Os01g67170
Os.15584.1.S1_at--679--9311Chr01:39317221..39317245 (25 bp)
TTAAAAGTTGTATGCCCCGGTCTGC
LOC_Os01g67170
Os.15584.1.S1_at--1107--10431Chr01:39317251..39317275 (25 bp)
TTACCGCCTTATGCTGTAGTTCGCA
LOC_Os01g67170
Os.15584.1.S1_at--302--10791Chr01:39317294..39317318 (25 bp)
TTGATCGACCTTTTTCTACATGAAA
LOC_Os01g67170
Target Sequence 
GACGATCTTGATCAGCTGCTTGAACTTGGTACCTCCAATAGGAGGGGCATTGAATCGCACCATGGATGTTGGTATCTTTC
AACTGATGNCTTTTCTGCTTCATGGGACATTNCAGACATACCAGATCACCTTTCCTCTCATTATCTAAAAACANTGGCTA
AAGTTTGCTTGCTTTAGATGATCCTCACAACATGAGTTCAACAACCCACCAGTTTTCGGGTGAATTCATGGGGTCATGGA
GATGTATGTACAGGCTTCGCTCTGTTTTCCAACCTCAGATGCGCATCTTTAGGCCATGAATTCTGAGAATTCATGCATTT
CTGGACGTGCTAGCCGCTGCTNCATGACCNAAGTACCGTGCTGGTTGATTCCNTTGAAAAATTACAGGCTAGGACNCTGA
ATTGGCANGGTTTCACTGGAAAGCGGAAAGTGAAAATACATCTGAATGTTGTAAGACTTGACTAGAGCTGTTAAAAGTTG
TATGCCCCGGTCTGCGGNCCTTACCGCCTTATGCTGTAGTTCGCAGCTGGTGACTTAAGAATTTTGATCGACCTTTTTCT
ACATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis