Browse Element(s) Details


Os.18285.1.S1_at

Description gb:CA762923
DB_XREF= gi:25806962
DB_XREF=BR060005B10A12.ab1
CLONE=BR060005B10A12.ab1
TID=Os.18285.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.18285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-glucosidase (P0674H09.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6722011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.2.S1_x_at11/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.1.S1_at10/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67200NANA1+39325126..39326849ribosomal protein L13 family protein, putative
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g67229NANA1+39338346..39338807NA
LOC_Os01g67240Os.38100.1.S1_at11/111+39340675..39344644Formin Homology 2 Domain containing protein, expressed
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18285.1.S1_at--541--6451Chr01:39336252..39336276 (25 bp)
GATCAATCGGCAACGCTTGACCAAG
LOC_Os01g67220
Os.18285.1.S1_at--696--6471Chr01:39336285..39336309 (25 bp)
GATACGACGAGGGTTGGTTACTTCA
LOC_Os01g67220
Os.18285.1.S1_at--746--7871Chr01:39336300..39336324 (25 bp)
GGTTACTTCAAAGGATACCTCGCGT
LOC_Os01g67220
Os.18285.1.S1_at--846--9971Chr01:39336315..39336339 (25 bp)
TACCTCGCGTCAGTTGCACAAGCAA
LOC_Os01g67220
Os.18285.1.S1_at--918--2051Chr01:39336451..39336475 (25 bp)
ACTTCGCATGGTCGTTCCTGGACAA
LOC_Os01g67220
Os.18285.1.S1_at--60--9371Chr01:39336478..39336502 (25 bp)
TCGAGTGGGCTATGGGATACACCAA
LOC_Os01g67220
Os.18285.1.S1_at--497--6731Chr01:39336524..39336548 (25 bp)
TGATTACAAAAATGGGCTTTCCCGG
LOC_Os01g67220
Os.18285.1.S1_at--669--531Chr01:39336550..39336574 (25 bp)
ATCCCAAAGCATCGGCCCGGTGGTT
LOC_Os01g67220
Os.18285.1.S1_at--232--7511Chr01:39336569..39336593 (25 bp)
GTGGTTCTCGCGCTTCTTAAAGGGC
LOC_Os01g67220
Os.18285.1.S1_at--101--4751Chr01:39336612..39336636 (25 bp)
GCTGACATGAACTAGGCCATCCTGA
LOC_Os01g67220
Os.18285.1.S1_at--819--6931Chr01:39336700..39336724 (25 bp)
GTAGTGTATCTATTCATCATCATAA
LOC_Os01g67220
Target Sequence 
GATCAATCGGCAACGCTTGACCAAGTCTTGAATGATACGACGAGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGC
ACAAGCAATCAAGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTCGAGTGGGCTATGGGAT
ACACCAAGAGGTTTGGCATTGTTTATGTTGATTACAAAAATGGGCTTTCCCGGCATCCCAAAGCATCGGCCCGGTGGTTC
TCGCGCTTCTTAAAGGGCGATGACGCTGAGAACAAAGCTGACATGAACTAGGCCATCCTGAAGAAAGTAAAGGAACATTA
CACAGTAATCNGTTTCTGCTGTTGTTGTATCTTATATTGATATATGTAGTGTATCTATTCATCATCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis