Browse Element(s) Details


Os.10377.1.S1_at

Description gb:AK105061.1
DB_XREF= gi:32990270
TID=Os.10377.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-H09, full insert sequence.
FL= gb:AK065055.1 gb:AK121862.1 gb:AK100403.1 gb:AK105061.1 gb:AK061505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g671809/11Ribonuclease T2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.2.S1_x_at11/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.1.S1_at10/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67200NANA1+39325126..39326849ribosomal protein L13 family protein, putative
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g67229NANA1+39338346..39338807NA
LOC_Os01g67240Os.38100.1.S1_at11/111+39340675..39344644Formin Homology 2 Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009611biological_processresponse to wounding
GO:0009718biological_processanthocyanin biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0005576cellular_componentextracellular region
GO:0005622cellular_componentintracellular
GO:0004521molecular_functionendoribonuclease activity
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10377.1.S1_at--5--7571Chr01:39319001..39319025 (25 bp)
GGGCCTCACCGCAAATTGTTTGCAA
LOC_Os01g67180
Os.10377.1.S1_at--5--6531NONE
GATTTGAAGCCCCTTGATTGCCTTA
NONE
Os.10377.1.S1_at--412--71Chr01:39318361..39318385 (25 bp)
ATTGCCTTACTACTACTGCTACCAA
LOC_Os01g67180
Os.10377.1.S1_at--805--5331Chr01:39318318..39318342 (25 bp)
GAAGTATTGCCCTCGATACATCACC
LOC_Os01g67180
Os.10377.1.S1_at--799--7011Chr01:39318182..39318206 (25 bp)
GTACATGCTAATTCTACTCGGGAGA
LOC_Os01g67180
Os.10377.1.S1_at--515--9771Chr01:39318113..39318137 (25 bp)
TAAGATACGATTACCGCGAGCAAGA
LOC_Os01g67180
Os.10377.1.S1_at--1060--1211Chr01:39318063..39318087 (25 bp)
AGTTCAGGGCTCTTAGCTGCTTAAG
LOC_Os01g67180
Os.10377.1.S1_at--135--2091Chr01:39317980..39318004 (25 bp)
ACATTTGTAAGCACGGCACGCCAGA
LOC_Os01g67180
Os.10377.1.S1_at--997--8591Chr01:39317867..39317891 (25 bp)
TGGTCAGGGTCATCTGCGACTGCAA
LOC_Os01g67180
Os.10377.1.S1_at--248--5631Chr01:39317825..39317849 (25 bp)
GACAGTGGCAATCGGTCTGAACTTT
LOC_Os01g67180
Os.10377.1.S1_at--536--3511Chr01:39317781..39317805 (25 bp)
CATGTATGTGCCCAGAGTACGTGTT
NONE
Target Sequence 
GGGCCTCACCGCAAATTGTTTGCAAGAAGGGCTCAGTTGAAGAACTGAGGTTATGCTTTGACAAAGATTTGAAGCCCCTT
GATTGCCTTACTACTACTGCTACCAATGAAAACGTATCGAAGAAGAAGTATTGCCCTCGATACATCACCCTGCCAACATA
TGACCCCATAGTACATGCTAATTCTACTCGGGAGATCATAACAGTCGAAAGTGAGGTCTATGGATATCTTTACACATCCT
AAGATACGATTACCGCGAGCAAGAATTACATGGCCATGATGAAGCCGGTAGTTCAGGGCTCTTAGCTGCTTAAGACATAC
TGGGGCCGGCATTGAGGTTCAAGGAAATGTATATCTAGATAACTCGATTATTACATTTGTAAGCACGGCACGCCAGAACA
ACGGAGAATGTGATTGTGTCTGAAAAATCAATTGCTTTATGTACTATGCAAGGTTGGAAAATAGTTCGTCCATGTATATA
GTCATTGGTCAGGGTCATCTGCGACTGCAATCTGCTGAATTATAATGGACAGTGGCAATCGGTCTGAACTTTTCNGGCTT
GGAATATTTATCATGTATGTGCCCAGAGTACGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis