Browse Element(s) Details


Os.55134.1.S1_at

Description gb:AK107551.1
DB_XREF= gi:32992760
TID=Os.55134.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A09, full insert sequence.
FL= gb:AK107551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g337003/11hypothetical protein
LOC_Os01g671801/11Ribonuclease T2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33680NANA2+20076291..20077808U-box domain containing protein, expressed
LOC_Os02g33690OsAffx.24558.1.S1_at11/112+20084348..20084722hypothetical protein
LOC_Os02g33700OsAffx.12337.1.S1_at10/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55134.1.S1_at3/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55296.1.S1_x_at2/112+20096900..20098594hypothetical protein
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009611biological_processresponse to wounding
GO:0009718biological_processanthocyanin biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0005576cellular_componentextracellular region
GO:0005622cellular_componentintracellular
GO:0004521molecular_functionendoribonuclease activity
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55134.1.S1_at--222--811Chr02:20096856..20096880 (25 bp)
ATGGGAGGACCGCTCTCTACCCTAA
NONE
Os.55134.1.S1_at--92--9431Chr02:20096871..20096895 (25 bp)
TCTACCCTAAGCACGTGGACACGGC
NONE
Os.55134.1.S1_at--70--8531Chr02:20096886..20096910 (25 bp)
TGGACACGGCGAGCATGGCAGCAAC
NONE
Os.55134.1.S1_at--891--3971Chr02:20097169..20097193 (25 bp)
CGGGTCAAGAAAGGGCGCGCGGTCG
LOC_Os02g33700
Os.55134.1.S1_at--594--9591NONE
TCTTGGCGGCGTTTCTGTGTTTTCT
NONE
Os.55134.1.S1_at--148--4711NONE
GCGGCGTTTCTGTGTTTTCTGCTTG
NONE
Os.55134.1.S1_at--550--7431Chr01:39318659..39318681 (22 bp)
GTGTTTTCTGCTTGGTTTCTTCGTC
LOC_Os01g67180
Os.55134.1.S1_at--778--10311NONE
TTTCTGCTTGGTTTCTTCGTCGCAC
NONE
Os.55134.1.S1_at--456--10851NONE
TTGGTTTCTTCGTCGCACTCCAGCT
NONE
Os.55134.1.S1_at--352--10331Chr02:20097291..20097315 (25 bp)
TTTCTTGTTTTATCATCTATGTTCT
LOC_Os02g33700
Os.55134.1.S1_at--216--10432Chr06:14917702..14917725 (24 bp)
TTATCATCTATGTTCTCTTTCTCAG
NONE
Target Sequence 
ATGGGAGGACCGCTCTCTACCCTAAGCACGTGGACACGGCGAGCATGGCAGCAACCGCCGCTGCCGCGAGGAGGAGGAGG
GTGCGCGGCAGCCGCCGCCGCCGACCGCTCGGCGTCGACCTGGCCAAGGCAGCGGCCGGGAGGAGGGCGCGCTCGTCCTC
AGCGTTCTTGGCAGCGGCTCAAGAAAGGGCGGCGGGGTCGATGGCGCCGCCTCGCCTCGCCGTCGGCCGCTCGCGTGGCG
GTGGAGCTCGGCATCGACCTGGCCAAGGCGGTGGTCGGGAGGAGGGCATGCTCGTCCTCGGTGTTCTTGGTGGCGGGTCA
AGAAAGGGCGCGCGGTCGACAGCGTTCTTGGCGGCGTTTCTGTGTTTTCTGCTTGGTTTCTTCGTCGCACTCCAGCTCCT
CCACCGCCGGCTGGGAAAGAGAAAGGATTTTGTGCTTTCTTGTTTTATCATCTATGTTCTCTTTCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis