Browse Element(s) Details


OsAffx.24560.1.S1_s_at

Description tigr:9630.m03204
TID=OsAffx.24560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquinol-cytochrome C reductase hinge protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3373010/11Ubiquinol-cytochrome C reductase hinge protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33700OsAffx.12337.1.S1_at10/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55134.1.S1_at3/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55296.1.S1_x_at2/112+20096900..20098594hypothetical protein
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33740Os.31602.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33740OsAffx.2847.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33750Os.50564.1.A1_s_at11/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33750Os.50564.2.S1_at10/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33760OsAffx.2848.1.S1_at11/112+20136469..20138777hypothetical protein
LOC_Os02g33770Os.8837.1.S1_at11/112+20142014..20144139expressed protein
LOC_Os02g33780Os.56326.2.S1_at11/112+20146585..20148253expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750cellular_componentrespiratory chain complex III (sensu Eukaryota)
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24560.1.S1_s_at--1009--8411NONE
GGCCGTCGCGAGCATGTCGGATGAG
NONE
OsAffx.24560.1.S1_s_at--372--991Chr02:20120195..20120219 (25 bp)
AGGAGGTATCTGACCCGAAGGCACT
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--1009--6871Chr02:20120190..20120214 (25 bp)
GTATCTGACCCGAAGGCACTCCTAG
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--722--8931Chr02:20120185..20120209 (25 bp)
TGACCCGAAGGCACTCCTAGAGGAT
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--259--2931Chr02:20120178..20120202 (25 bp)
AAGGCACTCCTAGAGGATCGATCGA
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--200--3811Chr02:20120172..20120196 (25 bp)
CTCCTAGAGGATCGATCGAAGGCTA
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--1109--9351Chr02:20120157..20120181 (25 bp)
TCGAAGGCTAAGTGTGTGTACCAGT
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--412--8311Chr02:20120152..20120176 (25 bp)
GGCTAAGTGTGTGTACCAGTGGTAT
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--966--6971Chr02:20120143..20120164 (22 bp)
GTACCAGTGGTATGAATATCAGAAA
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--230--5231Chr02:20119804..20120151 (25 bp)
GAATATCAGAAATGTGTCAAGAGAA
LOC_Os02g33730
OsAffx.24560.1.S1_s_at--1087--5191Chr02:20119782..20119806 (25 bp)
GAATTGAAGATGATGAGACTGGTCA
LOC_Os02g33730
Target Sequence 
GGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGT
ACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24560.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis