Browse Element(s) Details


OsAffx.12861.4.S1_x_at

Description tigr:9640.m02155
TID=OsAffx.12861.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gcn5-like protein 1 (rt14 protein homolog). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g227609/11hypothetical protein
LOC_Os02g337301/11Ubiquinol-cytochrome C reductase hinge protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22720NANA12+12815130..12816719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g22730NANA12+12818843..12819508hypothetical protein
LOC_Os12g22740Os.46012.2.S1_x_at4/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.27088.1.A1_x_at3/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.46012.3.S1_x_at1/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22740Os.54691.1.S1_x_at1/1112+12824131..12828678retrotransposon protein, putative, unclassified
LOC_Os12g22750NANA12+12838213..12838922hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_x_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_s_at11/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_x_at8/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_at6/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.10967.1.S1_x_at4/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.2.S1_at2/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.4.S1_x_at1/1112+12845213..12847529hypothetical protein
LOC_Os12g22780OsAffx.31835.1.S1_at11/1112+12850448..12851431hypothetical protein
LOC_Os12g22790NANA12+12860537..12860836hypothetical protein
LOC_Os12g22800Os.54004.1.S1_at11/1112+12861763..12863518expressed protein
LOC_Os12g22810Os.7279.1.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_x_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.3.S1_at8/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750cellular_componentrespiratory chain complex III (sensu Eukaryota)
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12861.4.S1_x_at--188--9211NONE
TCCAGCCATCCAGGTCCATTTAAGG
NONE
OsAffx.12861.4.S1_x_at--49--4411Chr12:12841179..12841456 (25 bp)
GCCATCCAGGTCCATTTAAGGACAA
LOC_Os12g22760
OsAffx.12861.4.S1_x_at--565--6171Chr12:12843022..12843042 (21 bp)
GAGGAGGGTGTTGCATCGAATAGAT
LOC_Os12g22760
OsAffx.12861.4.S1_x_at--978--5211Chr12:12843035..12843059 (25 bp)
GAATAGATGCGATATAGCCACGCGT
LOC_Os12g22760
OsAffx.12861.4.S1_x_at--641--10171Chr12:12843047..12843071 (25 bp)
TATAGCCACGCGTGATTCTTGCGAG
LOC_Os12g22760
OsAffx.12861.4.S1_x_at--849--1835Chr12:12843054..12843078 (25 bp)
ACGCGTGATTCTTGCGAGGTCGCAT
LOC_Os12g22760
OsAffx.12861.4.S1_x_at--644--7413Chr12:12843058..12843082 (25 bp)
GTGATTCTTGCGAGGTCGCATGGCA
LOC_Os12g22760
OsAffx.12861.4.S1_x_at--854--7211Chr12:12843072..12843096 (25 bp)
GTCGCATGGCAGAGTGCTGGATCTA
LOC_Os12g22760
OsAffx.12861.4.S1_x_at--1073--4711NONE
GCTGGATCTAGTGAGAGAGCAAAGA
NONE
OsAffx.12861.4.S1_x_at--75--4911Chr12:12843812..12843836 (25 bp)
GCTTCTTGCTACAATCGCGTGGTAC
LOC_Os12g22760
OsAffx.12861.4.S1_x_at--701--4411Chr12:12843864..12843888 (25 bp)
GCCACCAATGCAATCAACTGTCTTG
LOC_Os12g22760
Target Sequence 
TCCAGCCATCCAGGTCCATTTAAGGACAAGATAGCAATAATTCTTGATGAGCTGGATGTACAGATAGAGGATAAAGATGG
TGCTAAAACTGACAATGATGAGGAGGGTGTTGCATCGAATAGATGCGATATAGCCACGCGTGATTCTTGCGAGGTCGCAT
GGCAGAGTGCTGGATCTAGTGAGAGAGCAAAGATGGATGCTGTGAGGAGTGCGGCGCGGGTTGCAGATCTTCTCGTGGCC
ACGGTTGACGGCGGAGTGCAGGAGCTCTACATCAACGAGAAGCGCATAGAGCTTGAAGCCCGCGCGCTTCTTGCTACAAT
CGCGTGGTACAGGAAGCAGACTGACCAGTGGCTTGCTGCCACCAATGCAATCAACTGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12861.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis